Variant report
| Variant | rs74028883 |
|---|---|
| Chromosome Location | chr15:92736676-92736677 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:92736484..92738328-chr15:92738601..92741490,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs55937656 | 1.00[AMR][1000 genomes] |
| rs60855340 | 1.00[AMR][1000 genomes] |
| rs74028809 | 1.00[AMR][1000 genomes] |
| rs74028810 | 1.00[AMR][1000 genomes] |
| rs74028819 | 1.00[AMR][1000 genomes] |
| rs74028823 | 1.00[AMR][1000 genomes] |
| rs74028831 | 1.00[AMR][1000 genomes] |
| rs74028833 | 1.00[AMR][1000 genomes] |
| rs74028892 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74030431 | 1.00[AMR][1000 genomes] |
| rs74030465 | 1.00[AMR][1000 genomes] |
| rs74030477 | 1.00[AMR][1000 genomes] |
| rs74030490 | 1.00[AMR][1000 genomes] |
| rs74030509 | 1.00[AMR][1000 genomes] |
| rs74030510 | 1.00[AMR][1000 genomes] |
| rs74030511 | 1.00[AMR][1000 genomes] |
| rs74030520 | 1.00[AMR][1000 genomes] |
| rs74030524 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948621 | chr15:92688981-93158095 | Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037878 | chr15:92713130-92739827 | Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:92733600-92741000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
