Variant report

Variant	rs60858311
Chromosome Location	chr1:196416020-196416021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:196411883..196413746-chr1:196415633..196418457,2	K562	blood:
2	chr1:196415350..196419645-chr1:196425384..196428727,4	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10733085	1.00[EUR][1000 genomes]
rs10754186	1.00[EUR][1000 genomes]
rs11810886	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12239616	0.91[AMR][1000 genomes]
rs1339953	1.00[EUR][1000 genomes]
rs57259842	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57291296	1.00[EUR][1000 genomes]
rs57375190	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59464070	1.00[EUR][1000 genomes]
rs59564010	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61005987	1.00[EUR][1000 genomes]
rs6674960	1.00[EUR][1000 genomes]
rs6675088	1.00[EUR][1000 genomes]
rs6676437	1.00[EUR][1000 genomes]
rs6676634	1.00[EUR][1000 genomes]
rs6682755	1.00[EUR][1000 genomes]
rs6684014	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689826	1.00[EUR][1000 genomes]
rs6695890	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6701301	1.00[EUR][1000 genomes]
rs6701566	1.00[EUR][1000 genomes]
rs6702372	1.00[EUR][1000 genomes]
rs73063979	1.00[EUR][1000 genomes]
rs73067641	1.00[EUR][1000 genomes]
rs73067647	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067650	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067655	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067657	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067662	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067663	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067664	1.00[EUR][1000 genomes]
rs73067676	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067680	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067681	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067684	1.00[EUR][1000 genomes]
rs73067685	1.00[EUR][1000 genomes]
rs73067688	1.00[EUR][1000 genomes]
rs73067689	1.00[EUR][1000 genomes]
rs73067702	1.00[EUR][1000 genomes]
rs73069708	1.00[EUR][1000 genomes]
rs73069711	1.00[EUR][1000 genomes]
rs73069713	1.00[EUR][1000 genomes]
rs73069718	1.00[EUR][1000 genomes]
rs73069736	1.00[EUR][1000 genomes]
rs73069738	1.00[EUR][1000 genomes]
rs73069741	1.00[EUR][1000 genomes]
rs73069743	1.00[EUR][1000 genomes]
rs73069750	1.00[EUR][1000 genomes]
rs73069787	1.00[EUR][1000 genomes]
rs73069791	1.00[EUR][1000 genomes]
rs73069796	1.00[EUR][1000 genomes]
rs73071737	1.00[EUR][1000 genomes]
rs73071798	1.00[EUR][1000 genomes]
rs73071802	1.00[EUR][1000 genomes]
rs7523390	1.00[EUR][1000 genomes]
rs7526622	1.00[EUR][1000 genomes]
rs7531235	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9659561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9662866	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9728591	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469680	chr1:196259846-196419016	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv482746	chr1:196259846-196419016	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196395200-196416400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr1:196401600-196416400	Weak transcription	Ovary	ovary
3	chr1:196411200-196420800	Enhancers	Liver	Liver

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