Variant report
Variant | rs73067676 |
---|---|
Chromosome Location | chr1:196416976-196416977 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
1
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rs_ID | r2[population] |
---|---|
rs10733085 | 1.00[EUR][1000 genomes] |
rs10754186 | 1.00[EUR][1000 genomes] |
rs11810886 | 1.00[EUR][1000 genomes] |
rs1339953 | 1.00[EUR][1000 genomes] |
rs57259842 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57291296 | 1.00[EUR][1000 genomes] |
rs57375190 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58029172 | 1.00[EUR][1000 genomes] |
rs59464070 | 1.00[EUR][1000 genomes] |
rs59564010 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs60858311 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61005987 | 1.00[EUR][1000 genomes] |
rs6674960 | 1.00[EUR][1000 genomes] |
rs6675088 | 1.00[EUR][1000 genomes] |
rs6676437 | 1.00[EUR][1000 genomes] |
rs6676634 | 1.00[EUR][1000 genomes] |
rs6682755 | 1.00[EUR][1000 genomes] |
rs6684014 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6689826 | 1.00[EUR][1000 genomes] |
rs6695890 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6701301 | 1.00[EUR][1000 genomes] |
rs6701566 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs6702372 | 1.00[EUR][1000 genomes] |
rs73063979 | 1.00[EUR][1000 genomes] |
rs73067641 | 1.00[EUR][1000 genomes] |
rs73067647 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73067650 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73067655 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73067657 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73067662 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73067663 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73067664 | 1.00[EUR][1000 genomes] |
rs73067680 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73067681 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73067684 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73067685 | 1.00[EUR][1000 genomes] |
rs73067688 | 1.00[EUR][1000 genomes] |
rs73067689 | 1.00[EUR][1000 genomes] |
rs73067702 | 1.00[EUR][1000 genomes] |
rs73069708 | 1.00[EUR][1000 genomes] |
rs73069711 | 1.00[EUR][1000 genomes] |
rs73069713 | 1.00[EUR][1000 genomes] |
rs73069718 | 1.00[EUR][1000 genomes] |
rs73069736 | 1.00[EUR][1000 genomes] |
rs73069738 | 1.00[EUR][1000 genomes] |
rs73069741 | 1.00[EUR][1000 genomes] |
rs73069743 | 1.00[EUR][1000 genomes] |
rs73069750 | 1.00[EUR][1000 genomes] |
rs73069787 | 1.00[EUR][1000 genomes] |
rs73069791 | 1.00[EUR][1000 genomes] |
rs73069796 | 1.00[EUR][1000 genomes] |
rs73071737 | 1.00[EUR][1000 genomes] |
rs73071798 | 1.00[EUR][1000 genomes] |
rs73071802 | 1.00[EUR][1000 genomes] |
rs7523390 | 1.00[EUR][1000 genomes] |
rs7526622 | 1.00[EUR][1000 genomes] |
rs7531235 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9659561 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9662866 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9728591 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv469680 | chr1:196259846-196419016 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
2 | nsv482746 | chr1:196259846-196419016 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | nsv931415 | chr1:196270759-196744780 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
4 | nsv1009233 | chr1:196301712-196568874 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:196411200-196420800 | Enhancers | Liver | Liver |
2 | chr1:196416400-196417200 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
3 | chr1:196416400-196417200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
4 | chr1:196416400-196417200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
5 | chr1:196416400-196417400 | Enhancers | Ovary | ovary |
6 | chr1:196416600-196417200 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
7 | chr1:196416800-196418200 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |