Variant report

Variant	rs73069708
Chromosome Location	chr1:196485594-196485595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:196479081..196481283-chr1:196483341..196485990,2	MCF-7	breast:
2	chr1:196484305..196487565-chr1:196489232..196492751,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10733085	1.00[EUR][1000 genomes]
rs10754186	1.00[EUR][1000 genomes]
rs11810886	1.00[EUR][1000 genomes]
rs1339953	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34860966	1.00[EUR][1000 genomes]
rs57259842	1.00[EUR][1000 genomes]
rs57291296	1.00[EUR][1000 genomes]
rs57375190	1.00[EUR][1000 genomes]
rs58029172	1.00[EUR][1000 genomes]
rs59464070	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59564010	1.00[EUR][1000 genomes]
rs60858311	1.00[EUR][1000 genomes]
rs61005987	1.00[EUR][1000 genomes]
rs6674960	1.00[EUR][1000 genomes]
rs6675088	1.00[EUR][1000 genomes]
rs6676437	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6676634	1.00[EUR][1000 genomes]
rs6682755	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684014	1.00[EUR][1000 genomes]
rs6689826	1.00[EUR][1000 genomes]
rs6695890	1.00[EUR][1000 genomes]
rs6701301	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6701566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6702372	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067641	1.00[EUR][1000 genomes]
rs73067647	1.00[EUR][1000 genomes]
rs73067650	1.00[EUR][1000 genomes]
rs73067655	1.00[EUR][1000 genomes]
rs73067657	1.00[EUR][1000 genomes]
rs73067662	1.00[EUR][1000 genomes]
rs73067663	1.00[EUR][1000 genomes]
rs73067664	1.00[EUR][1000 genomes]
rs73067676	1.00[EUR][1000 genomes]
rs73067680	1.00[EUR][1000 genomes]
rs73067681	1.00[EUR][1000 genomes]
rs73067684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067688	1.00[EUR][1000 genomes]
rs73067689	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067702	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069711	1.00[EUR][1000 genomes]
rs73069713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069736	1.00[EUR][1000 genomes]
rs73069738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069750	1.00[EUR][1000 genomes]
rs73069787	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069791	1.00[EUR][1000 genomes]
rs73069796	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071737	1.00[EUR][1000 genomes]
rs73071798	1.00[EUR][1000 genomes]
rs73071802	1.00[EUR][1000 genomes]
rs7523390	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7526622	1.00[EUR][1000 genomes]
rs7531235	1.00[EUR][1000 genomes]
rs9659561	1.00[EUR][1000 genomes]
rs9662866	1.00[EUR][1000 genomes]
rs9728591	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196480800-196504800	Weak transcription	Liver	Liver
2	chr1:196484800-196485800	Enhancers	Ovary	ovary
3	chr1:196485000-196485800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:196485000-196486200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:196485000-196486200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:196485000-196486400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr1:196485200-196486000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:196485200-196486200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:196485200-196486400	Flanking Active TSS	K562	blood
10	chr1:196485400-196486000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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