Variant report

Variant	rs73069787
Chromosome Location	chr1:196582110-196582111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr1:196582043-196582468	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:196581960..196583558-chr1:196622079..196624943,2	K562	blood:
2	chr1:196577078..196578949-chr1:196580523..196582245,2	K562	blood:

Variant related genes	Relation type
KCNT2	TF binding region
ENSG00000162687	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10733085	1.00[EUR][1000 genomes]
rs10754186	1.00[EUR][1000 genomes]
rs11799956	1.00[EUR][1000 genomes]
rs11810886	1.00[EUR][1000 genomes]
rs1339953	1.00[EUR][1000 genomes]
rs34860966	1.00[EUR][1000 genomes]
rs57259842	1.00[EUR][1000 genomes]
rs57291296	1.00[EUR][1000 genomes]
rs57375190	1.00[EUR][1000 genomes]
rs58029172	1.00[EUR][1000 genomes]
rs59464070	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59564010	1.00[EUR][1000 genomes]
rs60858311	1.00[EUR][1000 genomes]
rs61005987	1.00[EUR][1000 genomes]
rs61234560	1.00[EUR][1000 genomes]
rs6674960	1.00[EUR][1000 genomes]
rs6675088	1.00[EUR][1000 genomes]
rs6676437	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6676634	1.00[EUR][1000 genomes]
rs6682755	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684014	1.00[EUR][1000 genomes]
rs6689826	1.00[EUR][1000 genomes]
rs6695890	1.00[EUR][1000 genomes]
rs6701301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6701566	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6702372	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067647	1.00[EUR][1000 genomes]
rs73067650	1.00[EUR][1000 genomes]
rs73067655	1.00[EUR][1000 genomes]
rs73067657	1.00[EUR][1000 genomes]
rs73067662	1.00[EUR][1000 genomes]
rs73067663	1.00[EUR][1000 genomes]
rs73067664	1.00[EUR][1000 genomes]
rs73067676	1.00[EUR][1000 genomes]
rs73067680	1.00[EUR][1000 genomes]
rs73067681	1.00[EUR][1000 genomes]
rs73067684	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067685	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067688	1.00[EUR][1000 genomes]
rs73067689	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73067702	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069708	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069711	1.00[EUR][1000 genomes]
rs73069713	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069718	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069736	1.00[EUR][1000 genomes]
rs73069738	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069741	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069743	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069750	1.00[EUR][1000 genomes]
rs73069791	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73069796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071737	1.00[EUR][1000 genomes]
rs73071798	1.00[EUR][1000 genomes]
rs73071802	1.00[EUR][1000 genomes]
rs73073535	1.00[EUR][1000 genomes]
rs7523390	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7526622	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7531235	1.00[EUR][1000 genomes]
rs7535653	1.00[EUR][1000 genomes]
rs7537967	1.00[EUR][1000 genomes]
rs9659561	1.00[EUR][1000 genomes]
rs9662866	1.00[EUR][1000 genomes]
rs9728591	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196581200-196582200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links