Variant report
Variant | rs6676634 |
---|---|
Chromosome Location | chr1:196585821-196585822 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:196577930..196580028-chr1:196583597..196585920,2 | K562 | blood: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000162687 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10733085 | 1.00[EUR][1000 genomes] |
rs10754186 | 1.00[EUR][1000 genomes] |
rs11799956 | 0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[EUR][1000 genomes] |
rs11810883 | 1.00[CEU][hapmap] |
rs11810886 | 1.00[EUR][1000 genomes] |
rs12239616 | 1.00[MEX][hapmap];1.00[TSI][hapmap] |
rs1339953 | 1.00[EUR][1000 genomes] |
rs1339956 | 1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs34860966 | 1.00[EUR][1000 genomes] |
rs57259842 | 1.00[EUR][1000 genomes] |
rs57291296 | 1.00[EUR][1000 genomes] |
rs58029172 | 1.00[EUR][1000 genomes] |
rs59464070 | 1.00[EUR][1000 genomes] |
rs59564010 | 1.00[EUR][1000 genomes] |
rs60858311 | 1.00[EUR][1000 genomes] |
rs61005987 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61234560 | 1.00[EUR][1000 genomes] |
rs6428348 | 1.00[TSI][hapmap] |
rs6674960 | 1.00[EUR][1000 genomes] |
rs6675088 | 1.00[EUR][1000 genomes] |
rs6676437 | 1.00[EUR][1000 genomes] |
rs6682755 | 1.00[EUR][1000 genomes] |
rs6684014 | 1.00[EUR][1000 genomes] |
rs6689826 | 1.00[EUR][1000 genomes] |
rs6695890 | 1.00[EUR][1000 genomes] |
rs6701301 | 1.00[EUR][1000 genomes] |
rs6701566 | 1.00[EUR][1000 genomes] |
rs6702372 | 1.00[EUR][1000 genomes] |
rs73067650 | 1.00[EUR][1000 genomes] |
rs73067655 | 1.00[EUR][1000 genomes] |
rs73067657 | 1.00[EUR][1000 genomes] |
rs73067662 | 1.00[EUR][1000 genomes] |
rs73067663 | 1.00[EUR][1000 genomes] |
rs73067664 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73067676 | 1.00[EUR][1000 genomes] |
rs73067680 | 1.00[EUR][1000 genomes] |
rs73067681 | 1.00[EUR][1000 genomes] |
rs73067684 | 1.00[EUR][1000 genomes] |
rs73067685 | 1.00[EUR][1000 genomes] |
rs73067688 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73067689 | 1.00[EUR][1000 genomes] |
rs73067702 | 1.00[EUR][1000 genomes] |
rs73069708 | 1.00[EUR][1000 genomes] |
rs73069711 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73069713 | 1.00[EUR][1000 genomes] |
rs73069718 | 1.00[EUR][1000 genomes] |
rs73069736 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73069738 | 1.00[EUR][1000 genomes] |
rs73069741 | 1.00[EUR][1000 genomes] |
rs73069743 | 1.00[EUR][1000 genomes] |
rs73069750 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs73069787 | 1.00[EUR][1000 genomes] |
rs73069791 | 1.00[EUR][1000 genomes] |
rs73069796 | 1.00[EUR][1000 genomes] |
rs73071737 | 1.00[EUR][1000 genomes] |
rs73071798 | 1.00[EUR][1000 genomes] |
rs73071802 | 1.00[EUR][1000 genomes] |
rs73073535 | 1.00[EUR][1000 genomes] |
rs7523390 | 1.00[EUR][1000 genomes] |
rs7526622 | 1.00[EUR][1000 genomes] |
rs7531235 | 1.00[EUR][1000 genomes] |
rs7535653 | 1.00[EUR][1000 genomes] |
rs7537967 | 1.00[EUR][1000 genomes] |
rs9659561 | 1.00[EUR][1000 genomes] |
rs9662866 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
rs9728591 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv931415 | chr1:196270759-196744780 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
2 | nsv528460 | chr1:196542567-197446702 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
No data |