Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1889595	0.92[EUR][1000 genomes]
rs56125920	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56383386	0.90[EUR][1000 genomes]
rs57847751	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58033063	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58515711	0.89[ASN][1000 genomes]
rs58899441	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59086975	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60021834	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60499694	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60653179	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61433014	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61735894	0.96[EUR][1000 genomes]
rs61735906	0.96[EUR][1000 genomes]
rs6906753	0.87[EUR][1000 genomes]
rs6932213	0.92[EUR][1000 genomes]
rs73444596	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73446524	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73735415	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73735416	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73738524	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7755911	0.92[EUR][1000 genomes]
rs976319	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45631800-45645000	Weak transcription	Colonic Mucosa	Colon
2	chr6:45632000-45643400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:45632600-45643400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:45634200-45642200	Weak transcription	Fetal Thymus	thymus
5	chr6:45634200-45645200	Weak transcription	Right Atrium	heart
6	chr6:45635000-45644800	Weak transcription	NHLF	lung
7	chr6:45635600-45644200	Weak transcription	HSMM	muscle
8	chr6:45635600-45644800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:45635800-45643400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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