Variant report

Variant	rs73446524
Chromosome Location	chr6:45630693-45630694
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1889595	0.88[EUR][1000 genomes]
rs56125920	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56383386	0.87[EUR][1000 genomes]
rs57847751	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58033063	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58515711	0.89[ASN][1000 genomes]
rs58899441	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59086975	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60021834	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60499694	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60653179	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61046945	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61433014	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61735894	1.00[EUR][1000 genomes]
rs61735906	1.00[EUR][1000 genomes]
rs6906753	0.84[EUR][1000 genomes]
rs6932213	0.88[EUR][1000 genomes]
rs73444596	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73735415	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73735416	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73738524	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7755911	0.88[EUR][1000 genomes]
rs976319	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45626200-45632600	Weak transcription	HSMMtube	muscle
2	chr6:45626600-45631400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:45627200-45631000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:45627200-45631200	Weak transcription	NHLF	lung
5	chr6:45627400-45631200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:45627400-45631200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr6:45627400-45631400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:45629000-45631000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:45629000-45631400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:45629400-45631400	Bivalent Enhancer	Fetal Thymus	thymus
11	chr6:45629600-45633200	Weak transcription	Dnd41	blood
12	chr6:45630200-45631200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr6:45630400-45630800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:45630400-45630800	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr6:45630400-45631000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:45630400-45632400	Weak transcription	HSMM	muscle
17	chr6:45630400-45635000	Weak transcription	NHDF-Ad	bronchial
18	chr6:45630600-45630800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr6:45630600-45630800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:45630600-45631000	Bivalent Enhancer	Brain Hippocampus Middle	brain
21	chr6:45630600-45631000	Weak transcription	NH-A	brain
22	chr6:45630600-45631400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:45630600-45632000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

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