Variant report

Variant	rs7755911
Chromosome Location	chr6:45666142-45666143
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45662691..45665190-chr6:45666130..45668359,2	MCF-7	breast:
2	chr6:45664978..45667526-chr6:45671637..45673796,2	MCF-7	breast:
3	chr6:45643355..45645914-chr6:45665891..45668541,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1889595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56125920	0.85[EUR][1000 genomes]
rs56383386	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57847751	0.95[EUR][1000 genomes]
rs58033063	0.92[EUR][1000 genomes]
rs60499694	0.92[EUR][1000 genomes]
rs60653179	0.88[EUR][1000 genomes]
rs61046945	0.92[EUR][1000 genomes]
rs61433014	0.92[EUR][1000 genomes]
rs61735894	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61735906	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906753	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73444596	0.83[EUR][1000 genomes]
rs73446524	0.88[EUR][1000 genomes]
rs73735415	0.88[EUR][1000 genomes]
rs73735416	0.88[EUR][1000 genomes]
rs976319	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45664200-45666200	Enhancers	HSMM	muscle
2	chr6:45664200-45666600	Enhancers	NHEK	skin
3	chr6:45664200-45672400	Enhancers	Hela-S3	cervix
4	chr6:45664400-45666200	Enhancers	NHLF	lung
5	chr6:45664400-45666200	Enhancers	Osteobl	bone
6	chr6:45664400-45666400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:45664400-45666600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:45664400-45666600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:45664400-45666600	Enhancers	HMEC	breast
10	chr6:45664400-45666600	Enhancers	NH-A	brain
11	chr6:45664400-45667000	Enhancers	NHDF-Ad	bronchial
12	chr6:45664400-45667400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:45664600-45667000	Enhancers	HSMMtube	muscle
14	chr6:45664800-45666200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:45665200-45666400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:45666000-45666400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:45666000-45667200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:45666000-45667600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:45666000-45669000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:45666000-45670000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:45666000-45670600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:45666000-45671800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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