Variant report

Variant	rs61433014
Chromosome Location	chr6:45633623-45633624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45617993..45619581-chr6:45633411..45635573,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1889595	0.92[EUR][1000 genomes]
rs56125920	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56383386	0.90[EUR][1000 genomes]
rs57847751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58033063	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58515711	0.89[ASN][1000 genomes]
rs58899441	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59086975	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60021834	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60499694	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60653179	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61046945	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61735894	0.96[EUR][1000 genomes]
rs61735906	0.96[EUR][1000 genomes]
rs6906753	0.87[EUR][1000 genomes]
rs6932213	0.92[EUR][1000 genomes]
rs73444596	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73446524	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73735415	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73735416	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73738524	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7755911	0.92[EUR][1000 genomes]
rs976319	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45630400-45635000	Weak transcription	NHDF-Ad	bronchial
2	chr6:45631000-45634200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:45631000-45635600	Enhancers	NH-A	brain
4	chr6:45631800-45634200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:45631800-45635000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:45631800-45635400	Weak transcription	Esophagus	oesophagus
7	chr6:45631800-45645000	Weak transcription	Colonic Mucosa	Colon
8	chr6:45632000-45634000	Enhancers	Primary T cells from cord blood	blood
9	chr6:45632000-45634600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:45632000-45635000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:45632000-45635000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:45632000-45635200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:45632000-45643400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:45632200-45634800	Weak transcription	NHLF	lung
15	chr6:45632200-45636600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:45632400-45635200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:45632600-45634000	Enhancers	HSMMtube	muscle
18	chr6:45632600-45635600	Strong transcription	HSMM	muscle
19	chr6:45632600-45643400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:45632800-45634200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:45633000-45634800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:45633200-45633800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
23	chr6:45633200-45633800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
24	chr6:45633200-45634000	Enhancers	Dnd41	blood
25	chr6:45633200-45634200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:45633200-45634200	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr6:45633200-45634200	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr6:45633200-45634200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr6:45633200-45635200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr6:45633200-45635400	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:45633200-45635400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:45633200-45635800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr6:45633400-45633800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:45633400-45634200	Enhancers	Primary T cells fromperipheralblood	blood
35	chr6:45633400-45635200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:45633400-45635400	Enhancers	Primary B cells from peripheral blood	blood
37	chr6:45633400-45635600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:45633600-45633800	Enhancers	H9 Cell Line	embryonic stem cell
39	chr6:45633600-45633800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr6:45633600-45633800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:45633600-45633800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:45633600-45633800	Bivalent Enhancer	Small Intestine	intestine
43	chr6:45633600-45634200	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr6:45633600-45634200	Enhancers	Fetal Thymus	thymus
45	chr6:45633600-45635000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links