Variant report

Variant	rs73735415
Chromosome Location	chr6:45626333-45626334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45624715..45626390-chr6:45626802..45629666,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1889595	0.88[EUR][1000 genomes]
rs56125920	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56383386	0.87[EUR][1000 genomes]
rs57847751	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58033063	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58515711	0.89[ASN][1000 genomes]
rs58899441	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59086975	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60021834	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60499694	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60653179	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61046945	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61433014	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61735894	1.00[EUR][1000 genomes]
rs61735906	1.00[EUR][1000 genomes]
rs6906753	0.84[EUR][1000 genomes]
rs6932213	0.88[EUR][1000 genomes]
rs73444596	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73446524	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73735416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73738524	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7755911	0.88[EUR][1000 genomes]
rs976319	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45617400-45627400	Enhancers	NHDF-Ad	bronchial
2	chr6:45617800-45627200	Enhancers	NHLF	lung
3	chr6:45618200-45627200	Weak transcription	Gastric	stomach
4	chr6:45618800-45627200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:45620400-45626600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:45620800-45626400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:45621400-45626800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:45624400-45627400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:45625000-45626800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:45625200-45626800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:45625400-45627400	Enhancers	Dnd41	blood
12	chr6:45625600-45627000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:45625800-45627200	Enhancers	Fetal Brain Male	brain
14	chr6:45625800-45627400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:45626000-45626400	Enhancers	Osteobl	bone
16	chr6:45626000-45626800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:45626000-45627200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr6:45626000-45627200	Enhancers	HSMM	muscle
19	chr6:45626000-45627400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:45626200-45627400	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr6:45626200-45628200	Enhancers	Primary T cells from cord blood	blood
22	chr6:45626200-45629000	Weak transcription	NH-A	brain
23	chr6:45626200-45632600	Weak transcription	HSMMtube	muscle

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