Variant report

Variant	rs61178004
Chromosome Location	chr8:130427143-130427144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16904033	1.00[AMR][1000 genomes]
rs16904045	1.00[AMR][1000 genomes]
rs55749850	1.00[AMR][1000 genomes]
rs56274919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709696	1.00[AMR][1000 genomes]
rs73709703	1.00[AMR][1000 genomes]
rs73709747	1.00[AMR][1000 genomes]
rs73712622	1.00[AMR][1000 genomes]
rs73712623	1.00[AMR][1000 genomes]
rs73712630	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712632	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712633	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712635	1.00[AMR][1000 genomes]
rs73712723	1.00[AMR][1000 genomes]
rs73712724	1.00[AMR][1000 genomes]
rs73712725	1.00[AMR][1000 genomes]
rs73712726	1.00[AMR][1000 genomes]
rs73712727	1.00[AMR][1000 genomes]
rs73712729	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv6394	chr8:130421502-130446035	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130410200-130434600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:130424200-130427600	Weak transcription	GM12878-XiMat	blood
3	chr8:130425000-130427800	Weak transcription	Fetal Stomach	stomach
4	chr8:130426200-130427400	Enhancers	Dnd41	blood
5	chr8:130426400-130428400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:130426600-130428400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr8:130426600-130430800	Genic enhancers	K562	blood
8	chr8:130426800-130427200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr8:130426800-130427600	Enhancers	Fetal Thymus	thymus
10	chr8:130426800-130428000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:130426800-130428600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr8:130427000-130427600	Enhancers	Thymus	Thymus
13	chr8:130427000-130428400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr8:130427000-130449000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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