Variant report

Variant	rs73712727
Chromosome Location	chr8:130363051-130363052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16904033	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904045	1.00[AMR][1000 genomes]
rs55749850	1.00[AMR][1000 genomes]
rs56274919	1.00[AMR][1000 genomes]
rs61178004	1.00[AMR][1000 genomes]
rs73709696	1.00[AMR][1000 genomes]
rs73709703	1.00[AMR][1000 genomes]
rs73709747	1.00[AMR][1000 genomes]
rs73712622	1.00[AMR][1000 genomes]
rs73712623	1.00[AMR][1000 genomes]
rs73712630	1.00[AMR][1000 genomes]
rs73712632	1.00[AMR][1000 genomes]
rs73712633	1.00[AMR][1000 genomes]
rs73712635	1.00[AMR][1000 genomes]
rs73712723	1.00[AMR][1000 genomes]
rs73712724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712726	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712729	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130355000-130368400	Strong transcription	K562	blood
2	chr8:130356200-130365000	Weak transcription	Ovary	ovary
3	chr8:130357400-130363200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr8:130357800-130364600	Weak transcription	Thymus	Thymus
5	chr8:130361600-130368400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:130361600-130370800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:130361800-130371000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:130362400-130365000	Weak transcription	Fetal Thymus	thymus
9	chr8:130362800-130363200	ZNF genes & repeats	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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