Variant report

Variant	rs73709703
Chromosome Location	chr8:130423927-130423928
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16904033	1.00[AMR][1000 genomes]
rs16904045	1.00[AMR][1000 genomes]
rs55749850	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56274919	1.00[AMR][1000 genomes]
rs61178004	1.00[AMR][1000 genomes]
rs73709696	1.00[AMR][1000 genomes]
rs73709747	1.00[AMR][1000 genomes]
rs73712622	1.00[AMR][1000 genomes]
rs73712623	1.00[AMR][1000 genomes]
rs73712630	1.00[AMR][1000 genomes]
rs73712632	1.00[AMR][1000 genomes]
rs73712633	1.00[AMR][1000 genomes]
rs73712635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73712723	1.00[AMR][1000 genomes]
rs73712724	1.00[AMR][1000 genomes]
rs73712725	1.00[AMR][1000 genomes]
rs73712726	1.00[AMR][1000 genomes]
rs73712727	1.00[AMR][1000 genomes]
rs73712729	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429942	chr8:130397818-130460011	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv968553	chr8:130416069-130423976	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv6394	chr8:130421502-130446035	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130410200-130434600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:130416800-130426600	Strong transcription	K562	blood
3	chr8:130418800-130424000	Weak transcription	Dnd41	blood
4	chr8:130419800-130425800	Weak transcription	Fetal Thymus	thymus
5	chr8:130419800-130427000	Weak transcription	Thymus	Thymus
6	chr8:130420000-130424000	Weak transcription	Brain Hippocampus Middle	brain
7	chr8:130423200-130424000	Enhancers	Primary B cells from peripheral blood	blood
8	chr8:130423400-130424200	Enhancers	GM12878-XiMat	blood
9	chr8:130423400-130424400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr8:130423600-130424000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr8:130423600-130424400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:130423600-130424400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:130423600-130424400	Enhancers	NH-A	brain
14	chr8:130423600-130424600	Enhancers	Fetal Muscle Leg	muscle
15	chr8:130423600-130425000	Enhancers	Fetal Heart	heart
16	chr8:130423600-130425000	Enhancers	Fetal Stomach	stomach
17	chr8:130423800-130424000	Enhancers	Fetal Lung	lung
18	chr8:130423800-130424200	Enhancers	HSMMtube	muscle
19	chr8:130423800-130424400	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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