Variant report

Variant	rs61599458
Chromosome Location	chr17:16957218-16957219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:16945045..16948831-chr17:16956136..16958119,4	MCF-7	breast:
2	chr17:16953457..16957915-chr17:16961428..16964742,4	K562	blood:
3	chr17:16956089..16958847-chr17:16968316..16970450,3	K562	blood:
4	chr17:16950816..16952722-chr17:16954932..16957698,2	MCF-7	breast:
5	chr17:16955910..16958218-chr17:16967140..16970023,2	MCF-7	breast:
6	chr17:16948833..16952528-chr17:16954016..16957501,7	K562	blood:
7	chr17:16955891..16957915-chr17:16961428..16963448,2	K562	blood:
8	chr17:16950670..16953293-chr17:16954639..16957612,2	K562	blood:
9	chr17:16953007..16956653-chr17:16956657..16959834,3	MCF-7	breast:
10	chr17:16956631..16959260-chr17:16983096..16985186,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133030	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4488507	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57376511	0.82[EUR][1000 genomes]
rs59061797	0.81[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs60403917	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7219115	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73277608	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73277625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277631	0.98[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs73277633	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277644	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73279617	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73279625	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9909107	0.82[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16947600-16960200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:16948400-16958600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr17:16948600-16958800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:16948600-16959000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr17:16948800-16958800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr17:16949000-16957600	Enhancers	NHDF-Ad	bronchial
7	chr17:16949000-16958400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr17:16949000-16962000	Enhancers	Fetal Heart	heart
9	chr17:16949000-16966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr17:16949000-16975200	Weak transcription	K562	blood
11	chr17:16950200-16962600	Weak transcription	Dnd41	blood
12	chr17:16950200-16968200	Enhancers	Psoas Muscle	Psoas
13	chr17:16951000-16958800	Enhancers	Right Ventricle	heart
14	chr17:16951200-16957800	Enhancers	Brain Anterior Caudate	brain
15	chr17:16952000-16958400	Weak transcription	Aorta	Aorta
16	chr17:16952600-16960000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:16952600-16996400	Weak transcription	Fetal Brain Male	brain
18	chr17:16953600-16960600	Enhancers	Left Ventricle	heart
19	chr17:16953600-16967600	Genic enhancers	Fetal Muscle Trunk	muscle
20	chr17:16953800-16957400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr17:16953800-16957400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr17:16953800-16957400	Enhancers	Fetal Intestine Large	intestine
23	chr17:16953800-16957800	Enhancers	Primary B cells from peripheral blood	blood
24	chr17:16953800-16957800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr17:16953800-16957800	Enhancers	Brain Hippocampus Middle	brain
26	chr17:16953800-16958200	Enhancers	Pancreas	Pancrea
27	chr17:16953800-16958800	Genic enhancers	Fetal Muscle Leg	muscle
28	chr17:16953800-16959200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr17:16953800-16959200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr17:16953800-16959600	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr17:16953800-16960400	Enhancers	Ovary	ovary
32	chr17:16953800-16960800	Enhancers	Spleen	Spleen
33	chr17:16953800-16961000	Enhancers	Right Atrium	heart
34	chr17:16953800-16961800	Genic enhancers	A549	lung
35	chr17:16954000-16957400	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr17:16954000-16957600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr17:16954200-16961000	Enhancers	Stomach Mucosa	stomach
38	chr17:16954200-16962200	Genic enhancers	Fetal Stomach	stomach
39	chr17:16954800-16957600	Enhancers	Stomach Smooth Muscle	stomach
40	chr17:16954800-16958400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr17:16954800-16981200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr17:16955200-16958400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr17:16955400-16958000	Strong transcription	Hela-S3	cervix
44	chr17:16955400-16958600	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr17:16955400-16958800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr17:16955400-16970200	Weak transcription	NH-A	brain
47	chr17:16955400-16981200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr17:16955600-16957400	Enhancers	Primary B cells from cord blood	blood
49	chr17:16955600-16957600	Genic enhancers	Muscle Satellite Cultured Cells	--
50	chr17:16955600-16958600	Weak transcription	H1 Cell Line	embryonic stem cell

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