Variant report

Variant	rs73277608
Chromosome Location	chr17:16948064-16948065
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16947403..16948944-chr17:16950340..16952252,2	MCF-7	breast:
2	chr17:16947719..16948219-chr17:17109224..17109847,2	NB4	blood:
3	chr17:16941343..16943728-chr17:16947873..16949492,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179598	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4488507	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57376511	0.96[EUR][1000 genomes]
rs59061797	0.84[AFR][1000 genomes]
rs60403917	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61599458	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7219115	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73277607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73277625	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73277631	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73277633	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73277634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73277644	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73279617	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73279625	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9908728	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv543231	chr17:16926227-16950644	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16945000-16948200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr17:16945200-16948400	Active TSS	Aorta	Aorta
3	chr17:16945200-16948400	Active TSS	Esophagus	oesophagus
4	chr17:16945400-16948200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr17:16945400-16948200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr17:16945400-16948200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr17:16945400-16948200	Active TSS	Right Atrium	heart
8	chr17:16945400-16948200	Active TSS	NHDF-Ad	bronchial
9	chr17:16945400-16948600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr17:16945400-16948600	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr17:16945400-16948600	Active TSS	HSMMtube	muscle
12	chr17:16945400-16948800	Active TSS	HSMM	muscle
13	chr17:16945600-16948400	Active TSS	HMEC	breast
14	chr17:16945600-16948800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr17:16946200-16948200	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr17:16946200-16948200	Active TSS	GM12878-XiMat	blood
17	chr17:16946200-16948800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
18	chr17:16946200-16949000	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr17:16946200-16949000	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr17:16946200-16949000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr17:16946400-16948600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr17:16946400-16949000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr17:16946400-16949000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr17:16946400-16949000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr17:16946600-16948800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
26	chr17:16946600-16949000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
27	chr17:16946600-16949000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr17:16946600-16949000	Flanking Active TSS	Thymus	Thymus
29	chr17:16946600-16949000	Flanking Active TSS	Dnd41	blood
30	chr17:16946800-16949000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr17:16946800-16949000	Flanking Active TSS	Duodenum Mucosa	Duodenum
32	chr17:16946800-16949000	Flanking Active TSS	Fetal Muscle Leg	muscle
33	chr17:16946800-16949000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr17:16946800-16949200	Flanking Active TSS	HUVEC	blood vessel
35	chr17:16946800-16950000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr17:16947000-16949000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr17:16947000-16949000	Flanking Active TSS	Brain Anterior Caudate	brain
38	chr17:16947000-16949000	Flanking Active TSS	Brain Cingulate Gyrus	brain
39	chr17:16947000-16949000	Flanking Active TSS	Fetal Brain Female	brain
40	chr17:16947200-16948200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr17:16947200-16948200	Active TSS	Ovary	ovary
42	chr17:16947200-16948200	Active TSS	Psoas Muscle	Psoas
43	chr17:16947200-16948600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr17:16947200-16949000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr17:16947200-16949000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr17:16947200-16949000	Flanking Active TSS	Brain Hippocampus Middle	brain
47	chr17:16947200-16949000	Flanking Active TSS	Rectal Smooth Muscle	rectum
48	chr17:16947400-16948200	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr17:16947400-16948200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr17:16947400-16948200	Flanking Active TSS	Fetal Heart	heart

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