Variant report

Variant	rs73277607
Chromosome Location	chr17:16946991-16946992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16944536..16947207-chr17:17109103..17111480,2	MCF-7	breast:
2	chr17:16944416..16947050-chr17:16979219..16983384,3	MCF-7	breast:
3	chr17:16945686..16947847-chr3:44621097..44624084,2	MCF-7	breast:
4	chr17:16917707..16920531-chr17:16944662..16947361,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214820	Chromatin interaction
ENSG00000260328	Chromatin interaction
ENSG00000225442	Chromatin interaction
ENSG00000179598	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs4488507	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59061797	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs60403917	1.00[AMR][1000 genomes]
rs61599458	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7219115	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73277608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73277625	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73277631	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs73277633	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73277634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73277644	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73279617	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73279625	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9909107	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv543231	chr17:16926227-16950644	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3355439	chr17:16944752-16947600	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	esv3341315	chr17:16945077-16947125	Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16945000-16947000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr17:16945000-16947200	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr17:16945000-16948200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr17:16945200-16947000	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr17:16945200-16947000	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr17:16945200-16947000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr17:16945200-16947000	Active TSS	Brain Anterior Caudate	brain
8	chr17:16945200-16947000	Active TSS	Fetal Brain Female	brain
9	chr17:16945200-16947000	Active TSS	Psoas Muscle	Psoas
10	chr17:16945200-16947000	Active TSS	Sigmoid Colon	Sigmoid Colon
11	chr17:16945200-16947000	Active TSS	Small Intestine	intestine
12	chr17:16945200-16947200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr17:16945200-16947200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr17:16945200-16947200	Active TSS	Rectal Smooth Muscle	rectum
15	chr17:16945200-16947400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr17:16945200-16947400	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr17:16945200-16947400	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr17:16945200-16947600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr17:16945200-16947600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr17:16945200-16947600	Active TSS	Fetal Kidney	kidney
21	chr17:16945200-16947600	Active TSS	Gastric	stomach
22	chr17:16945200-16947600	Active TSS	Pancreas	Pancrea
23	chr17:16945200-16947800	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr17:16945200-16948400	Active TSS	Aorta	Aorta
25	chr17:16945200-16948400	Active TSS	Esophagus	oesophagus
26	chr17:16945400-16947000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr17:16945400-16947000	Active TSS	H9 Cell Line	embryonic stem cell
28	chr17:16945400-16947000	Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr17:16945400-16947000	Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr17:16945400-16947000	Active TSS	Brain Cingulate Gyrus	brain
31	chr17:16945400-16947000	Active TSS	Brain Germinal Matrix	brain
32	chr17:16945400-16947000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr17:16945400-16947000	Active TSS	Fetal Lung	lung
34	chr17:16945400-16947000	Active TSS	Left Ventricle	heart
35	chr17:16945400-16947000	Active TSS	Right Ventricle	heart
36	chr17:16945400-16947000	Active TSS	Osteobl	bone
37	chr17:16945400-16947200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr17:16945400-16947200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr17:16945400-16947200	Active TSS	Brain Angular Gyrus	brain
40	chr17:16945400-16947200	Active TSS	Brain Hippocampus Middle	brain
41	chr17:16945400-16947200	Active TSS	Brain Substantia Nigra	brain
42	chr17:16945400-16947200	Active TSS	Fetal Stomach	stomach
43	chr17:16945400-16947400	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr17:16945400-16947400	Active TSS	Lung	lung
45	chr17:16945400-16947400	Active TSS	NH-A	brain
46	chr17:16945400-16947400	Active TSS	NHEK	skin
47	chr17:16945400-16947600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr17:16945400-16947600	Active TSS	Fetal Intestine Large	intestine
49	chr17:16945400-16947600	Active TSS	Fetal Intestine Small	intestine
50	chr17:16945400-16947600	Active TSS	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links