Variant report

Variant	rs7219115
Chromosome Location	chr17:17018725-17018726
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17017540..17019089-chr17:17022012..17023742,2	MCF-7	breast:
2	chr17:17016476..17019464-chr17:17021686..17024565,2	K562	blood:
3	chr17:17008754..17011646-chr17:17017494..17019040,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4488507	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57376511	0.82[EUR][1000 genomes]
rs59061797	0.91[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs60403917	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61599458	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277607	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73277608	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73277625	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277631	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs73277633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277634	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277644	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73279617	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73279625	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9909107	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907728	chr17:17013189-17095487	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv984510	chr17:17015688-17048858	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17002600-17023200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:17006200-17033000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr17:17007800-17021000	Weak transcription	HepG2	liver
4	chr17:17009200-17025200	Enhancers	Brain Anterior Caudate	brain
5	chr17:17009400-17020600	Enhancers	Lung	lung
6	chr17:17010000-17032000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:17010200-17021600	Weak transcription	Dnd41	blood
8	chr17:17010200-17025000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr17:17010200-17025000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr17:17010400-17024000	Enhancers	Primary B cells from peripheral blood	blood
11	chr17:17010400-17025200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr17:17011000-17019200	Enhancers	Primary B cells from cord blood	blood
13	chr17:17011200-17028800	Weak transcription	Fetal Brain Female	brain
14	chr17:17011400-17021600	Weak transcription	Aorta	Aorta
15	chr17:17012000-17035200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr17:17012600-17023600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr17:17014000-17022200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr17:17014200-17019000	Enhancers	Fetal Lung	lung
19	chr17:17014200-17019400	Weak transcription	Hela-S3	cervix
20	chr17:17014400-17019800	Enhancers	Brain Cingulate Gyrus	brain
21	chr17:17015400-17019800	Weak transcription	Fetal Intestine Large	intestine
22	chr17:17015400-17035200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr17:17015600-17019000	Enhancers	HSMM	muscle
24	chr17:17015800-17020800	Enhancers	Psoas Muscle	Psoas
25	chr17:17015800-17023000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr17:17015800-17025200	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr17:17015800-17030000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr17:17016200-17019000	Enhancers	A549	lung
29	chr17:17016200-17019800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr17:17016200-17019800	Enhancers	GM12878-XiMat	blood
31	chr17:17016400-17022400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr17:17016400-17025000	Enhancers	Brain Substantia Nigra	brain
33	chr17:17016800-17025400	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr17:17017200-17019200	Enhancers	NHDF-Ad	bronchial
35	chr17:17017200-17020000	Enhancers	Fetal Muscle Leg	muscle
36	chr17:17017400-17018800	Enhancers	Osteobl	bone
37	chr17:17017400-17019000	Enhancers	HMEC	breast
38	chr17:17017600-17019000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr17:17017600-17022200	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr17:17017600-17025000	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr17:17017600-17025000	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr17:17017600-17025000	Enhancers	Brain Hippocampus Middle	brain
43	chr17:17017600-17025200	Enhancers	Fetal Heart	heart
44	chr17:17017800-17018800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr17:17017800-17018800	Enhancers	Placenta	Placenta
46	chr17:17017800-17019200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr17:17017800-17019200	Enhancers	Primary T cells from cord blood	blood
48	chr17:17017800-17019200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr17:17017800-17019200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr17:17017800-17019200	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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