Variant report

Variant	rs73277633
Chromosome Location	chr17:16997206-16997207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16990029..16991902-chr17:16996139..16998027,2	K562	blood:
2	chr17:16990609..16992779-chr17:16995614..16997816,2	MCF-7	breast:
3	chr17:16996588..16998552-chr17:17003380..17006242,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4488507	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57376511	0.82[EUR][1000 genomes]
rs59061797	0.94[EUR][1000 genomes]
rs60403917	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61599458	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7219115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277607	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73277608	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73277625	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277631	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs73277634	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73277644	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73279617	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73279625	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9909107	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059280	chr17:16975059-17017957	Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv960194	chr17:16992376-17000025	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16973600-16997600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr17:16986800-16997600	Weak transcription	NHDF-Ad	bronchial
3	chr17:16986800-17013600	Weak transcription	HUVEC	blood vessel
4	chr17:16988000-16999800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr17:16988200-17000000	Weak transcription	Fetal Kidney	kidney
6	chr17:16988800-17000600	Weak transcription	Aorta	Aorta
7	chr17:16989600-16997400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr17:16991000-17000200	Weak transcription	GM12878-XiMat	blood
9	chr17:16991600-17000200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr17:16991800-16999000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr17:16992000-16997400	Enhancers	Small Intestine	intestine
12	chr17:16992200-16999400	Weak transcription	NH-A	brain
13	chr17:16992200-16999600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr17:16992400-17000200	Weak transcription	Hela-S3	cervix
15	chr17:16992400-17010000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr17:16992600-17000000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr17:16992800-16999800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr17:16993000-17000600	Strong transcription	Primary T cells from cord blood	blood
19	chr17:16993200-17003800	Genic enhancers	Fetal Intestine Small	intestine
20	chr17:16993400-17000200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr17:16993400-17011400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr17:16994400-16999600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr17:16994600-16997600	Enhancers	Psoas Muscle	Psoas
24	chr17:16994600-16999200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr17:16994600-17003400	Enhancers	Ovary	ovary
26	chr17:16994600-17011600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr17:16994800-16997400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr17:16994800-16999200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr17:16995000-16997800	Enhancers	Colon Smooth Muscle	Colon
30	chr17:16995000-16997800	Enhancers	Fetal Lung	lung
31	chr17:16995000-16998200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr17:16995000-16998800	Weak transcription	Colonic Mucosa	Colon
33	chr17:16995000-16999400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr17:16995200-16998000	Weak transcription	Fetal Thymus	thymus
35	chr17:16995200-16998200	Enhancers	Brain Angular Gyrus	brain
36	chr17:16995200-16998600	Weak transcription	Pancreas	Pancrea
37	chr17:16995200-16998800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr17:16995200-16999200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr17:16995200-17001000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr17:16995400-16997600	Enhancers	Adipose Nuclei	Adipose
41	chr17:16995400-16998200	Enhancers	H9 Cell Line	embryonic stem cell
42	chr17:16995400-16998200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr17:16995400-16999000	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr17:16995400-17001600	Weak transcription	Brain Germinal Matrix	brain
45	chr17:16995400-17002400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr17:16995600-16998000	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr17:16995800-16997600	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr17:16995800-16999200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr17:16995800-16999200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr17:16995800-16999600	Weak transcription	Primary B cells from peripheral blood	blood

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