Variant report

Variant	rs61661712
Chromosome Location	chr8:105761184-105761185
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105543820..105546530-chr8:105760722..105763113,2	K562	blood:
2	chr8:105759294..105761344-chr8:105767843..105769830,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12548401	1.00[AMR][1000 genomes]
rs1996780	1.00[AMR][1000 genomes]
rs56981817	1.00[AMR][1000 genomes]
rs57778138	1.00[AMR][1000 genomes]
rs57852403	1.00[AMR][1000 genomes]
rs61265653	1.00[AMR][1000 genomes]
rs73295186	1.00[AMR][1000 genomes]
rs73295191	1.00[AMR][1000 genomes]
rs73297183	1.00[AMR][1000 genomes]
rs73297190	1.00[AMR][1000 genomes]
rs73299109	1.00[AMR][1000 genomes]
rs73299155	1.00[AMR][1000 genomes]
rs73299164	1.00[AMR][1000 genomes]
rs73299178	1.00[AMR][1000 genomes]
rs73299182	1.00[AMR][1000 genomes]
rs73299184	1.00[AMR][1000 genomes]
rs73299194	1.00[AMR][1000 genomes]
rs73299196	1.00[AMR][1000 genomes]
rs73301121	1.00[AMR][1000 genomes]
rs73301131	1.00[AMR][1000 genomes]
rs73301181	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301197	1.00[AMR][1000 genomes]
rs73302885	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105759600-105761200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:105760000-105766400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:105760400-105762600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:105760400-105764400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:105760400-105764600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:105760400-105764600	Weak transcription	NH-A	brain
7	chr8:105760400-105764600	Weak transcription	NHEK	skin
8	chr8:105760400-105764800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:105760600-105764400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:105760600-105764400	Weak transcription	HMEC	breast
11	chr8:105760600-105764400	Weak transcription	Osteobl	bone
12	chr8:105760600-105764600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:105760600-105766600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:105761000-105764600	Weak transcription	NHDF-Ad	bronchial

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