Variant report

Variant	rs73299178
Chromosome Location	chr8:105689139-105689140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:105683981..105686982-chr8:105687045..105690798,3	K562	blood:
2	chr8:105524416..105525111-chr8:105689111..105690026,3	MCF-7	breast:
3	chr8:105608581..105611555-chr8:105688371..105691323,2	K562	blood:
4	chr8:105600302..105602695-chr8:105688489..105691481,2	MCF-7	breast:
5	chr8:105688682..105691071-chr8:105693518..105695808,2	K562	blood:

Variant related genes	Relation type
ENSG00000147650	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12548401	1.00[AMR][1000 genomes]
rs35657080	1.00[AMR][1000 genomes]
rs56981817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57223449	1.00[AMR][1000 genomes]
rs57778138	1.00[AMR][1000 genomes]
rs57852403	1.00[AMR][1000 genomes]
rs61265653	1.00[AMR][1000 genomes]
rs61661712	1.00[AMR][1000 genomes]
rs73295186	1.00[AMR][1000 genomes]
rs73295191	1.00[AMR][1000 genomes]
rs73297183	1.00[AMR][1000 genomes]
rs73297190	1.00[AMR][1000 genomes]
rs73299109	1.00[AMR][1000 genomes]
rs73299155	1.00[AMR][1000 genomes]
rs73299164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73299182	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73299184	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73299194	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73299196	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73301121	1.00[AMR][1000 genomes]
rs73301131	1.00[AMR][1000 genomes]
rs73301181	1.00[AMR][1000 genomes]
rs73301197	1.00[AMR][1000 genomes]
rs73302885	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105679200-105690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:105681800-105689400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:105682800-105689800	Weak transcription	NHDF-Ad	bronchial
4	chr8:105686200-105689400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:105686200-105689800	Weak transcription	Osteobl	bone
6	chr8:105686400-105689800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:105688400-105691200	Enhancers	K562	blood

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