Variant report

Variant	rs73299182
Chromosome Location	chr8:105690796-105690797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:105519242..105519958-chr8:105690559..105691134,2	K562	blood:
2	chr8:105683981..105686982-chr8:105687045..105690798,3	K562	blood:
3	chr8:105608581..105611555-chr8:105688371..105691323,2	K562	blood:
4	chr8:105526062..105526652-chr8:105690605..105691128,2	MCF-7	breast:
5	chr8:105524885..105525682-chr8:105690457..105691092,3	MCF-7	breast:
6	chr8:105600302..105602695-chr8:105688489..105691481,2	MCF-7	breast:
7	chr8:105641202..105643080-chr8:105689846..105691930,2	K562	blood:
8	chr8:105690620..105691387-chr8:105771785..105772501,2	MCF-7	breast:
9	chr8:105686405..105688523-chr8:105690320..105691996,2	K562	blood:
10	chr8:105651066..105651941-chr8:105690493..105691094,2	MCF-7	breast:
11	chr8:105688682..105691071-chr8:105693518..105695808,2	K562	blood:
12	chr8:105524499..105526205-chr8:105690324..105691789,15	MCF-7	breast:
13	chr8:105604121..105606507-chr8:105689435..105691482,2	K562	blood:
14	chr8:105524484..105525518-chr8:105690525..105692084,13	K562	blood:

No data

Variant related genes	Relation type
ENSG00000147650	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12548401	1.00[AMR][1000 genomes]
rs35657080	1.00[AMR][1000 genomes]
rs56981817	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57223449	1.00[AMR][1000 genomes]
rs57778138	1.00[AMR][1000 genomes]
rs57852403	1.00[AMR][1000 genomes]
rs61265653	1.00[AMR][1000 genomes]
rs61661712	1.00[AMR][1000 genomes]
rs73295186	1.00[AMR][1000 genomes]
rs73295191	1.00[AMR][1000 genomes]
rs73297183	1.00[AMR][1000 genomes]
rs73297190	1.00[AMR][1000 genomes]
rs73299109	1.00[AMR][1000 genomes]
rs73299155	1.00[AMR][1000 genomes]
rs73299164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73299178	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73299184	1.00[AMR][1000 genomes]
rs73299194	1.00[AMR][1000 genomes]
rs73299196	1.00[AMR][1000 genomes]
rs73301121	1.00[AMR][1000 genomes]
rs73301131	1.00[AMR][1000 genomes]
rs73301181	1.00[AMR][1000 genomes]
rs73301197	1.00[AMR][1000 genomes]
rs73302885	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105688400-105691200	Enhancers	K562	blood
2	chr8:105689400-105691000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:105689400-105691000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:105689800-105691000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:105689800-105691000	Enhancers	Osteobl	bone
6	chr8:105689800-105691200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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