Variant report

Variant	rs61790831
Chromosome Location	chr4:20274232-20274233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16869577	1.00[AFR][1000 genomes]
rs1949139	1.00[AFR][1000 genomes]
rs56058527	1.00[AFR][1000 genomes]
rs61789392	1.00[AFR][1000 genomes]
rs61789402	1.00[AFR][1000 genomes]
rs61789408	1.00[AFR][1000 genomes]
rs61789409	1.00[AFR][1000 genomes]
rs61789425	1.00[AFR][1000 genomes]
rs61789426	1.00[AFR][1000 genomes]
rs61789636	1.00[AFR][1000 genomes]
rs61790785	1.00[AFR][1000 genomes]
rs61790832	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878736	chr4:20233035-20279858	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv878737	chr4:20233035-20282334	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv878738	chr4:20255306-20300192	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv878739	chr4:20255306-20307922	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv461287	chr4:20261786-20292239	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv593791	chr4:20261786-20292239	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20258000-20275400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:20258200-20299400	Weak transcription	Fetal Stomach	stomach
3	chr4:20260000-20276200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:20268600-20280000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:20268800-20283200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:20269200-20284600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:20271000-20275600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:20272200-20274600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:20272200-20275000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:20272800-20276000	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:20273000-20275200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:20273200-20274600	Enhancers	Osteobl	bone
13	chr4:20273400-20274400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:20273400-20274400	Enhancers	Fetal Lung	lung
15	chr4:20273400-20274600	Enhancers	NHEK	skin
16	chr4:20273600-20274400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:20273600-20274400	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr4:20273600-20274400	Enhancers	Fetal Kidney	kidney
19	chr4:20273800-20274600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:20273800-20274600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr4:20273800-20274800	Enhancers	NH-A	brain
22	chr4:20273800-20275600	Weak transcription	NHDF-Ad	bronchial
23	chr4:20273800-20278000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr4:20273800-20286600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:20274000-20274600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr4:20274000-20274600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:20274000-20274800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:20274200-20274600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:20274200-20275000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr4:20274200-20278200	Weak transcription	NHLF	lung

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