Variant report

Variant	rs61789392
Chromosome Location	chr4:20369563-20369564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16869577	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16869595	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1949139	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56058527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56274585	0.96[ASN][1000 genomes]
rs61789379	0.88[ASN][1000 genomes]
rs61789383	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61789388	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61789400	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61789402	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61789404	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61789406	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61789408	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789409	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789410	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789425	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789426	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789636	1.00[AFR][1000 genomes]
rs61790785	1.00[AFR][1000 genomes]
rs61790831	1.00[AFR][1000 genomes]
rs61790832	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20353800-20375600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:20358600-20371000	Weak transcription	Brain Anterior Caudate	brain
3	chr4:20364000-20370800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:20364000-20375400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:20365600-20370800	Weak transcription	Brain Substantia Nigra	brain
6	chr4:20366000-20375600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr4:20366400-20371000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:20367000-20370800	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:20367000-20371000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:20368200-20372600	Enhancers	NHLF	lung
11	chr4:20368400-20369600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:20368400-20372200	Enhancers	NHDF-Ad	bronchial
13	chr4:20368600-20370800	Enhancers	Fetal Lung	lung
14	chr4:20368600-20372400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:20368800-20371000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:20369000-20370400	Enhancers	Osteobl	bone
17	chr4:20369200-20369600	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr4:20369200-20369600	Enhancers	Pancreas	Pancrea
19	chr4:20369200-20369800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:20369200-20369800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:20369200-20369800	Enhancers	Fetal Stomach	stomach
22	chr4:20369200-20371000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:20369400-20369600	Enhancers	Aorta	Aorta
24	chr4:20369400-20369600	Enhancers	Spleen	Spleen
25	chr4:20369400-20372400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links