Variant report

Variant	rs61789379
Chromosome Location	chr4:20345073-20345074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs56058527	0.88[ASN][1000 genomes]
rs56274585	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61789383	0.93[ASN][1000 genomes]
rs61789388	0.88[ASN][1000 genomes]
rs61789392	0.88[ASN][1000 genomes]
rs61789395	0.84[ASN][1000 genomes]
rs61789400	0.84[ASN][1000 genomes]
rs61789402	0.84[ASN][1000 genomes]
rs61789404	0.84[ASN][1000 genomes]
rs61789406	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20329000-20350200	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:20329200-20348800	Weak transcription	NHDF-Ad	bronchial
3	chr4:20339200-20353000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:20342600-20347800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:20343400-20355400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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