Variant report

Variant	rs61789404
Chromosome Location	chr4:20396982-20396983
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16869577	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16869595	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1949139	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56058527	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56274585	0.86[ASN][1000 genomes]
rs61789379	0.84[ASN][1000 genomes]
rs61789383	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61789388	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61789392	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61789395	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789400	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789402	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789408	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789409	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789410	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789425	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789426	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20393200-20405800	Weak transcription	Fetal Lung	lung
2	chr4:20393200-20408800	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:20395000-20398200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:20395200-20397000	Enhancers	Brain Cingulate Gyrus	brain
5	chr4:20395600-20399000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:20395600-20404800	Weak transcription	NHDF-Ad	bronchial
7	chr4:20395600-20405000	Weak transcription	Brain Anterior Caudate	brain
8	chr4:20396200-20397000	Enhancers	Brain Angular Gyrus	brain
9	chr4:20396400-20397000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:20396400-20397200	Enhancers	Brain Hippocampus Middle	brain
11	chr4:20396800-20397000	Enhancers	Aorta	Aorta
12	chr4:20396800-20397000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr4:20396800-20397200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr4:20396800-20398800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links