Variant report

Variant	rs61789400
Chromosome Location	chr4:20392291-20392292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16869577	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16869595	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1949139	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56058527	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56274585	0.86[ASN][1000 genomes]
rs61789379	0.84[ASN][1000 genomes]
rs61789383	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61789388	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61789392	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61789395	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789402	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789404	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789406	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789408	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789409	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789410	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789425	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789426	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20380200-20392600	Weak transcription	NHDF-Ad	bronchial
2	chr4:20387800-20392600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:20387800-20392800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:20388000-20392800	Weak transcription	Fetal Lung	lung
5	chr4:20388600-20393000	Weak transcription	NHLF	lung
6	chr4:20388800-20396200	Weak transcription	Brain Angular Gyrus	brain
7	chr4:20391600-20392600	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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