Variant report

Variant	rs61789383
Chromosome Location	chr4:20354279-20354280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16869577	0.87[EUR][1000 genomes]
rs16869595	0.82[EUR][1000 genomes]
rs1949139	0.87[EUR][1000 genomes]
rs56058527	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56274585	0.91[ASN][1000 genomes]
rs61789379	0.93[ASN][1000 genomes]
rs61789388	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61789392	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61789395	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61789400	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61789402	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61789404	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61789406	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61789408	0.89[EUR][1000 genomes]
rs61789409	0.89[EUR][1000 genomes]
rs61789410	0.87[EUR][1000 genomes]
rs61789425	0.87[EUR][1000 genomes]
rs61789426	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20343400-20355400	Weak transcription	Fetal Lung	lung
2	chr4:20348600-20354400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:20350600-20358400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:20353400-20358400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:20353400-20369200	Weak transcription	Pancreas	Pancrea
6	chr4:20353600-20354600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:20353600-20354800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:20353600-20354800	Weak transcription	NHDF-Ad	bronchial
9	chr4:20353600-20355200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:20353600-20355200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:20353600-20355600	Weak transcription	Brain Anterior Caudate	brain
12	chr4:20353600-20358000	Weak transcription	Brain Angular Gyrus	brain
13	chr4:20353600-20358400	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:20353600-20369200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:20353800-20355200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:20353800-20355200	Weak transcription	Brain Hippocampus Middle	brain
17	chr4:20353800-20356800	Weak transcription	Fetal Kidney	kidney
18	chr4:20353800-20357800	Weak transcription	Brain Substantia Nigra	brain
19	chr4:20353800-20375600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr4:20354000-20354400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:20354000-20354400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:20354200-20354600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:20354200-20355200	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links