Variant report

Variant	rs56058527
Chromosome Location	chr4:20363950-20363951
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16869577	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16869595	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1949139	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56274585	0.96[ASN][1000 genomes]
rs61789379	0.88[ASN][1000 genomes]
rs61789383	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61789388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789395	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61789400	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61789402	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61789404	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61789406	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61789408	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789409	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789410	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789425	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789426	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789636	1.00[AFR][1000 genomes]
rs61790785	1.00[AFR][1000 genomes]
rs61790831	1.00[AFR][1000 genomes]
rs61790832	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20353400-20369200	Weak transcription	Pancreas	Pancrea
2	chr4:20353600-20369200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:20353800-20375600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:20357000-20368400	Weak transcription	NHDF-Ad	bronchial
5	chr4:20357000-20369000	Weak transcription	Osteobl	bone
6	chr4:20358400-20368200	Weak transcription	NHLF	lung
7	chr4:20358600-20366800	Weak transcription	Fetal Lung	lung
8	chr4:20358600-20371000	Weak transcription	Brain Anterior Caudate	brain
9	chr4:20358800-20365400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:20359800-20365000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:20360000-20368200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:20361000-20368600	Weak transcription	NHEK	skin
13	chr4:20363600-20364000	Enhancers	Brain Angular Gyrus	brain
14	chr4:20363600-20364000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr4:20363600-20364200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:20363800-20364000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr4:20363800-20364000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:20363800-20364000	Enhancers	Aorta	Aorta

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