Variant report

Variant	rs61789410
Chromosome Location	chr4:20412272-20412273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16869577	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16869595	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949139	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56058527	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56274585	0.80[ASN][1000 genomes]
rs61789383	0.87[EUR][1000 genomes]
rs61789388	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789392	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789395	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61789400	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789402	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789404	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789406	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789408	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789409	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789425	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789426	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593795	chr4:20407591-20418308	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20405200-20419600	Weak transcription	NHDF-Ad	bronchial
2	chr4:20406200-20420000	Weak transcription	Fetal Lung	lung
3	chr4:20410200-20420200	Weak transcription	NHLF	lung
4	chr4:20410400-20413400	Weak transcription	Brain Anterior Caudate	brain
5	chr4:20410600-20415800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:20411000-20413400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links