Variant report

Variant	rs61789395
Chromosome Location	chr4:20375960-20375961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16869577	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16869595	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1949139	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56058527	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56274585	0.93[ASN][1000 genomes]
rs61789379	0.84[ASN][1000 genomes]
rs61789383	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61789388	0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61789392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61789400	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789402	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789404	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789406	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789408	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61789409	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61789410	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61789425	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61789426	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20372400-20377800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:20374400-20376600	Enhancers	Fetal Lung	lung
3	chr4:20375200-20376200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:20375400-20376000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:20375400-20376400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:20375400-20376400	Enhancers	Brain Hippocampus Middle	brain
7	chr4:20375600-20376000	Active TSS	Brain Substantia Nigra	brain
8	chr4:20375600-20376000	Enhancers	Rectal Smooth Muscle	rectum
9	chr4:20375600-20376200	Enhancers	Colon Smooth Muscle	Colon
10	chr4:20375600-20376400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:20375600-20376600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:20375600-20376600	Enhancers	Brain Cingulate Gyrus	brain
13	chr4:20375800-20376200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:20375800-20376200	Enhancers	NHDF-Ad	bronchial
15	chr4:20375800-20376400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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