Variant report

Variant	rs56274585
Chromosome Location	chr4:20365093-20365094
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16869577	0.80[ASN][1000 genomes]
rs16869595	0.80[ASN][1000 genomes]
rs1949139	0.80[ASN][1000 genomes]
rs56058527	0.96[ASN][1000 genomes]
rs61789379	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61789383	0.91[ASN][1000 genomes]
rs61789388	0.96[ASN][1000 genomes]
rs61789392	0.96[ASN][1000 genomes]
rs61789395	0.93[ASN][1000 genomes]
rs61789400	0.86[ASN][1000 genomes]
rs61789402	0.86[ASN][1000 genomes]
rs61789404	0.86[ASN][1000 genomes]
rs61789406	0.86[ASN][1000 genomes]
rs61789408	0.80[ASN][1000 genomes]
rs61789409	0.80[ASN][1000 genomes]
rs61789410	0.80[ASN][1000 genomes]
rs61789425	0.80[ASN][1000 genomes]
rs61789426	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1842873	chr4:20361842-20399168	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20353400-20369200	Weak transcription	Pancreas	Pancrea
2	chr4:20353600-20369200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:20353800-20375600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:20357000-20368400	Weak transcription	NHDF-Ad	bronchial
5	chr4:20357000-20369000	Weak transcription	Osteobl	bone
6	chr4:20358400-20368200	Weak transcription	NHLF	lung
7	chr4:20358600-20366800	Weak transcription	Fetal Lung	lung
8	chr4:20358600-20371000	Weak transcription	Brain Anterior Caudate	brain
9	chr4:20358800-20365400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:20360000-20368200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:20361000-20368600	Weak transcription	NHEK	skin
12	chr4:20364000-20365400	Weak transcription	Brain Angular Gyrus	brain
13	chr4:20364000-20369400	Weak transcription	Aorta	Aorta
14	chr4:20364000-20370800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr4:20364000-20375400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:20364600-20366200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:20365000-20365200	Enhancers	Brain Cingulate Gyrus	brain
18	chr4:20365000-20367400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links