Variant report

Variant	rs16869577
Chromosome Location	chr4:20409481-20409482
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16869595	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949139	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56058527	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56274585	0.80[ASN][1000 genomes]
rs61789383	0.87[EUR][1000 genomes]
rs61789388	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789392	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61789395	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61789400	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789402	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789404	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789406	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61789408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789410	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789425	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61790785	1.00[AFR][1000 genomes]
rs61790831	1.00[AFR][1000 genomes]
rs61790832	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1004503	chr4:20399974-20409944	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3420991	chr4:20405954-20410452	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3500334	chr4:20406404-20409602	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3500335	chr4:20406404-20409602	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3445244	chr4:20406879-20409727	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv593795	chr4:20407591-20418308	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20405200-20419600	Weak transcription	NHDF-Ad	bronchial
2	chr4:20406200-20420000	Weak transcription	Fetal Lung	lung
3	chr4:20409000-20409600	Enhancers	Brain Cingulate Gyrus	brain
4	chr4:20409000-20409800	Enhancers	Brain Anterior Caudate	brain
5	chr4:20409000-20410800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr4:20409200-20409600	Enhancers	Brain Hippocampus Middle	brain
7	chr4:20409200-20410200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr4:20409200-20411000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:20409400-20410000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:20409400-20410200	Enhancers	Ovary	ovary
11	chr4:20409400-20411600	Weak transcription	Colon Smooth Muscle	Colon

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