Variant report

Variant	rs61839415
Chromosome Location	chr10:19021464-19021465
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11006711	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11598310	0.95[EUR][1000 genomes]
rs12266986	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16917693	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17635177	0.95[EUR][1000 genomes]
rs17703211	0.99[EUR][1000 genomes]
rs61839395	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61839418	0.99[EUR][1000 genomes]
rs61839457	0.96[EUR][1000 genomes]
rs61841863	0.96[EUR][1000 genomes]
rs61851149	0.97[EUR][1000 genomes]
rs61851150	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19019400-19024200	Weak transcription	K562	blood
2	chr10:19021000-19021800	Enhancers	Fetal Lung	lung
3	chr10:19021200-19021800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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