Variant report

Variant	rs16917693
Chromosome Location	chr10:19002710-19002711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11006711	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11006722	1.00[CEU][hapmap]
rs12241053	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap]
rs12266986	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17702308	0.98[AFR][1000 genomes]
rs17703211	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61839395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61839415	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61839418	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61839457	0.95[EUR][1000 genomes]
rs61841863	0.95[EUR][1000 genomes]
rs61851149	0.93[EUR][1000 genomes]
rs61851150	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv550122	chr10:18993303-19017942	Enhancers Weak transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3313986	chr10:18999408-19005520	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3313997	chr10:18999408-19005520	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv525910	chr10:19002550-19002710	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19001400-19003000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:19001800-19002800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:19001800-19002800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:19001800-19002800	Enhancers	Hela-S3	cervix
5	chr10:19001800-19002800	Enhancers	HMEC	breast
6	chr10:19002600-19008600	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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