Variant report

Variant	rs61851149
Chromosome Location	chr10:19166695-19166696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11006711	0.96[EUR][1000 genomes]
rs11598310	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12266986	0.97[EUR][1000 genomes]
rs16917693	0.93[EUR][1000 genomes]
rs17635177	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17703211	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61839395	0.93[EUR][1000 genomes]
rs61839415	0.97[EUR][1000 genomes]
rs61839418	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61839457	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61841863	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61851150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv550123	chr10:19090812-19228730	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv518006	chr10:19160029-19170218	Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv5999	chr10:19163832-19199133	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19164200-19169400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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