Variant report
| Variant | rs61839418 |
|---|---|
| Chromosome Location | chr10:19032579-19032580 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| ENSG00000234244 | TF binding region |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs11006711 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11598310 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12266986 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs16917693 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17635177 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17703211 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61839395 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs61839415 | 0.99[EUR][1000 genomes] |
| rs61839457 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs61841863 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs61851149 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs61851150 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894915 | chr10:18984571-19257664 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
