Variant report

Variant	rs61839457
Chromosome Location	chr10:19087524-19087525
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11006711	0.97[EUR][1000 genomes]
rs11598310	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12266986	0.96[EUR][1000 genomes]
rs16917693	0.95[EUR][1000 genomes]
rs17635177	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17703211	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61839395	0.95[EUR][1000 genomes]
rs61839415	0.96[EUR][1000 genomes]
rs61839418	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61839455	0.95[AFR][1000 genomes]
rs61841863	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61851149	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61851150	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19085000-19093200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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