Variant report

Variant	rs12241053
Chromosome Location	chr10:19032528-19032529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11006711	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11006722	1.00[CEU][hapmap]
rs11598310	0.93[EUR][1000 genomes]
rs12266986	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16917693	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17635177	0.93[EUR][1000 genomes]
rs17702308	0.80[AFR][1000 genomes]
rs17703211	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61839395	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61839415	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61839418	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61839457	0.97[EUR][1000 genomes]
rs61841863	0.97[EUR][1000 genomes]
rs61851149	0.96[EUR][1000 genomes]
rs61851150	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links