Variant report

Variant	rs61916169
Chromosome Location	chr11:55121453-55121454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11821230	0.85[AFR][1000 genomes]
rs1230338	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1364759	0.83[EUR][1000 genomes]
rs1425195	0.88[EUR][1000 genomes]
rs17493401	0.90[EUR][1000 genomes]
rs56229188	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs61894885	0.85[AFR][1000 genomes]
rs61896021	0.85[AFR][1000 genomes]
rs61896024	0.85[AFR][1000 genomes]
rs61916170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61916171	1.00[EUR][1000 genomes]
rs61916176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61916398	0.85[EUR][1000 genomes]
rs61916400	0.85[EUR][1000 genomes]
rs61916402	0.85[EUR][1000 genomes]
rs61916403	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61916404	0.85[EUR][1000 genomes]
rs61916405	0.85[EUR][1000 genomes]
rs61916412	0.85[EUR][1000 genomes]
rs61916413	0.85[EUR][1000 genomes]
rs61917396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61917397	1.00[EUR][1000 genomes]
rs61917399	1.00[EUR][1000 genomes]
rs61917402	0.95[EUR][1000 genomes]
rs61917403	0.95[EUR][1000 genomes]
rs61917404	0.95[EUR][1000 genomes]
rs61917431	0.95[EUR][1000 genomes]
rs61917432	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61917433	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61917435	0.95[EUR][1000 genomes]
rs61918221	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61918237	0.90[EUR][1000 genomes]
rs61918388	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs61918407	0.80[EUR][1000 genomes]
rs7106100	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7109287	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7111663	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7111681	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7121804	0.85[EUR][1000 genomes]
rs7924882	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7925927	0.95[EUR][1000 genomes]
rs7940928	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7943036	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7943639	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7948802	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7951955	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830215	chr11:54711990-55340379	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1048402	chr11:54720811-55148163	Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1039155	chr11:54720811-55156607	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1042875	chr11:54720811-55191418	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1038336	chr11:54720811-55213281	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1052144	chr11:54720811-55438474	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv1053949	chr11:54773881-55363328	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv1051643	chr11:54826801-55363328	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv524091	chr11:54875038-55522549	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
10	nsv1054262	chr11:55030215-55146638	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
12	nsv1054854	chr11:55045843-55121706	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv1047317	chr11:55045843-55132783	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	esv2760193	chr11:55045855-55121706	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	nsv1042642	chr11:55050890-55121706	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv1050431	chr11:55065048-55148163	ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv832153	chr11:55068335-55242831	ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
18	nsv1053286	chr11:55069566-55126589	ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv1051199	chr11:55074969-55261905	Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
20	nsv975110	chr11:55076487-55318108	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
21	nsv522655	chr11:55083434-55156434	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
22	nsv528911	chr11:55083434-55156434	ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
23	nsv554798	chr11:55083434-55156434	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
24	nsv467886	chr11:55083434-55408700	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
25	nsv554799	chr11:55083434-55408700	Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
26	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
27	nsv916012	chr11:55084067-55622531	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
28	esv3387641	chr11:55084684-55196590	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
29	esv3328290	chr11:55084699-55196666	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
30	esv3342341	chr11:55084713-55196631	ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
31	esv998925	chr11:55084765-55196478	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
32	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
33	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
34	nsv825891	chr11:55092866-55148407	Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
35	nsv976455	chr11:55108724-55160430	ZNF genes & repeats Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
36	nsv983184	chr11:55109631-55147264	Enhancers ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
37	nsv1036325	chr11:55119267-55442306	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:55120800-55121800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:55120800-55122200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:55121200-55121600	Enhancers	Brain Hippocampus Middle	brain

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