Variant report

Variant	rs61950712
Chromosome Location	chr12:86735943-86735944
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10506935	0.82[AMR][1000 genomes]
rs12304593	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12305255	0.84[AMR][1000 genomes]
rs12306280	0.92[EUR][1000 genomes]
rs12306726	0.84[AMR][1000 genomes]
rs12316480	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12582690	0.94[EUR][1000 genomes]
rs17288772	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17289052	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17359446	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17367374	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17367869	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17369073	0.82[AMR][1000 genomes]
rs1922743	0.82[AMR][1000 genomes]
rs2406157	0.82[AMR][1000 genomes]
rs2406158	0.82[AMR][1000 genomes]
rs55649116	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55733909	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55820226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55870715	0.82[AMR][1000 genomes]
rs55904324	0.82[AMR][1000 genomes]
rs55956857	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56293486	0.96[EUR][1000 genomes]
rs60436792	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61133374	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61948994	0.82[AMR][1000 genomes]
rs61949013	0.84[AMR][1000 genomes]
rs61949036	0.82[AMR][1000 genomes]
rs61949037	0.84[AMR][1000 genomes]
rs61949039	0.84[AMR][1000 genomes]
rs61949041	0.82[AMR][1000 genomes]
rs61949045	0.87[AMR][1000 genomes]
rs61949047	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61949048	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61949049	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61949475	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61949482	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61949483	0.92[EUR][1000 genomes]
rs61949532	0.82[AMR][1000 genomes]
rs61949533	0.82[AMR][1000 genomes]
rs61949558	0.82[AMR][1000 genomes]
rs61950663	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61950665	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61950667	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61950671	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61950674	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61950706	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61950711	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950713	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61950714	0.98[EUR][1000 genomes]
rs61950746	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950747	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950748	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950749	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61950760	0.80[AMR][1000 genomes]
rs61950761	0.82[AMR][1000 genomes]
rs61950762	0.82[AMR][1000 genomes]
rs61950763	0.82[AMR][1000 genomes]
rs61950764	0.82[AMR][1000 genomes]
rs61950771	0.82[AMR][1000 genomes]
rs61950775	0.82[AMR][1000 genomes]
rs61950780	0.82[AMR][1000 genomes]
rs73189397	0.82[AMR][1000 genomes]
rs73191472	0.82[AMR][1000 genomes]
rs73191477	0.82[AMR][1000 genomes]
rs73191482	0.82[AMR][1000 genomes]
rs73191485	0.82[AMR][1000 genomes]
rs73191486	0.82[AMR][1000 genomes]
rs767898	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2761759	chr12:86415936-86747726	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv518059	chr12:86416212-86747726	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1041397	chr12:86438607-86737558	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1037003	chr12:86610040-86798121	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1053234	chr12:86701070-86774957	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2754127	chr12:86723232-87576932	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:86735600-86736200	Enhancers	Duodenum Mucosa	Duodenum
2	chr12:86735800-86736400	Flanking Active TSS	Hela-S3	cervix

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