Variant report

Variant	rs61960386
Chromosome Location	chr13:90413244-90413245
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12870277	0.91[EUR][1000 genomes]
rs1327328	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1571190	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1932307	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1932308	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2349554	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4773499	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4773500	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4773501	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4773502	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4773503	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4773504	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4773505	0.82[EUR][1000 genomes]
rs4773506	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4773507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7983923	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7990925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9515612	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9515613	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9515614	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9515615	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9515616	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9522667	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9522672	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9522676	0.95[ASN][1000 genomes]
rs9522677	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9522678	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9522679	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9522680	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9522684	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9522685	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9522686	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9522687	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9522689	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9522690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9522691	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9522692	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9555936	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9560425	0.94[ASN][1000 genomes]
rs9560426	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9583730	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9588748	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053657	chr13:90100510-90578568	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2422378	chr13:90280619-90799585	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv900865	chr13:90289165-90432585	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900866	chr13:90325420-90432585	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900867	chr13:90338898-90432585	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv456061	chr13:90355675-90448341	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv562642	chr13:90355675-90448341	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv456062	chr13:90383458-90487155	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv562643	chr13:90383458-90487155	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3330508	chr13:90401807-90835334	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:90408600-90415600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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