Variant report

Variant	rs61977961
Chromosome Location	chr14:71140286-71140287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71139454..71141486-chr4:39457284..39460064,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163682	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11625206	1.00[ASN][1000 genomes]
rs2233135	1.00[ASN][1000 genomes]
rs28655624	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088143	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45560640	0.95[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988421	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988422	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988423	1.00[ASN][1000 genomes]
rs72719792	1.00[ASN][1000 genomes]
rs72721903	1.00[ASN][1000 genomes]
rs9323544	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs953872	1.00[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71128400-71140800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:71133200-71140400	Weak transcription	Fetal Intestine Small	intestine
3	chr14:71133200-71140600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:71133200-71140600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:71133200-71140600	Weak transcription	Fetal Thymus	thymus
6	chr14:71133200-71144200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr14:71133200-71150600	Weak transcription	Pancreas	Pancrea
8	chr14:71133200-71151000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr14:71133200-71173000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:71133400-71141600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:71133600-71140600	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:71133600-71143000	Strong transcription	H1 Cell Line	embryonic stem cell
13	chr14:71133600-71143800	Weak transcription	Small Intestine	intestine
14	chr14:71133800-71141000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:71134000-71143400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr14:71134200-71142800	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr14:71134400-71141000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr14:71134400-71141000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr14:71134400-71141400	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr14:71134600-71158600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:71134800-71140400	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr14:71135000-71141000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr14:71135200-71144400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr14:71135800-71140800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr14:71136000-71141000	Strong transcription	Primary T cells from cord blood	blood
26	chr14:71136200-71143000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr14:71137000-71141000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr14:71137000-71141400	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr14:71137200-71140800	Strong transcription	GM12878-XiMat	blood
30	chr14:71138000-71142800	Strong transcription	Primary B cells from peripheral blood	blood
31	chr14:71138200-71140600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr14:71138400-71144000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr14:71138400-71146200	Weak transcription	Spleen	Spleen
34	chr14:71138600-71146400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr14:71138800-71142400	Weak transcription	Lung	lung
36	chr14:71138800-71143000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr14:71138800-71145600	Weak transcription	Gastric	stomach
38	chr14:71139000-71140600	Weak transcription	Esophagus	oesophagus
39	chr14:71139000-71140600	Strong transcription	HSMM	muscle
40	chr14:71139000-71141200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr14:71139000-71141800	Weak transcription	Fetal Muscle Leg	muscle
42	chr14:71139000-71142000	Weak transcription	Fetal Stomach	stomach
43	chr14:71139000-71143000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr14:71139000-71144200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr14:71139000-71144200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr14:71139000-71144400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:71139000-71144800	Weak transcription	Thymus	Thymus
48	chr14:71139000-71145600	Weak transcription	Aorta	Aorta
49	chr14:71139000-71151000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr14:71139000-71152200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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