Variant report

Variant	rs9323544
Chromosome Location	chr14:71151478-71151479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71150935..71153106-chr14:71165634..71167400,2	MCF-7	breast:
2	chr14:71149455..71152082-chr14:71275817..71278072,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259153	Chromatin interaction
ENSG00000006432	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11625206	1.00[ASN][1000 genomes]
rs13379090	0.84[EUR][1000 genomes]
rs2233135	1.00[ASN][1000 genomes]
rs28655624	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088143	0.88[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45560640	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977961	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988421	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988422	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988423	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719792	1.00[ASN][1000 genomes]
rs72721903	1.00[ASN][1000 genomes]
rs953872	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527969	chr14:71150421-71155984	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71133200-71173000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:71134600-71158600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:71139000-71152200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:71139200-71151800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:71139200-71152200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:71140200-71152600	Weak transcription	Brain Germinal Matrix	brain
7	chr14:71140400-71151800	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr14:71140600-71152200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:71141000-71160800	Weak transcription	Primary T cells from cord blood	blood
10	chr14:71141400-71152000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr14:71142800-71153600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr14:71143000-71152000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:71143000-71152200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:71143000-71177800	Weak transcription	Primary B cells from cord blood	blood
15	chr14:71143200-71152600	Weak transcription	Fetal Brain Female	brain
16	chr14:71143400-71152200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr14:71144400-71152000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:71144600-71152000	Weak transcription	HSMMtube	muscle
19	chr14:71151400-71153000	Enhancers	NHEK	skin
20	chr14:71151400-71154600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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