Variant report

Variant	rs72719792
Chromosome Location	chr14:71105128-71105129
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr14:71105062-71105640	MCF-7	breast:	n/a	n/a
2	GATA3	chr14:71105082-71105557	T-47D	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:71105122-71105172	CMK	blood:	n/a
2	chr14:71105122-71105172	SK-N-SH_RA	brain:	n/a
3	chr14:71105122-71105172	LNCaP	prostate:	n/a
4	chr14:71105122-71105172	HL-60	blood:	n/a
5	chr14:71105122-71105172	ProgFib	skin:	n/a
6	chr14:71105122-71105172	SAEC	small airway:	n/a
7	chr14:71105122-71105172	MCF10A-Er-Src	breast:	n/a
8	chr14:71105122-71105172	NT2-D1	testis:	n/a
9	chr14:71105122-71105172	GM06990	blood:	n/a
10	chr14:71105122-71105172	Caco-2	colon:	n/a
11	chr14:71105122-71105172	HMEC	breast:	n/a
12	chr14:71105122-71105172	GM12892	blood:	n/a
13	chr14:71105122-71105172	T-47D	breast:	n/a
14	chr14:71105122-71105172	AoSMC	blood vessel:	n/a
15	chr14:71105122-71105172	NB4	blood:	n/a
16	chr14:71105122-71105172	HRPEpiC	eye:	n/a
17	chr14:71105122-71105172	HRCEpiC	kidney:	n/a
18	chr14:71105122-71105172	NHDF-neo	bronchial:	n/a
19	chr14:71105122-71105172	ECC-1	luminal epithelium:	n/a
20	chr14:71105122-71105172	HRE	kidney:	n/a
21	chr14:71105122-71105172	HNPCEpiC	eye:	n/a
22	chr14:71105122-71105172	HAEpiC	amniotic membrane:	n/a
23	chr14:71105122-71105172	SK-N-SH	brain:	n/a
24	chr14:71105122-71105172	K562	blood:	n/a
25	chr14:71105122-71105172	RPTEC	kidney:	n/a
26	chr14:71105122-71105172	PANC-1	pancreas:	n/a
27	chr14:71105122-71105172	AG04450	lung:	fetal
28	chr14:71105122-71105172	HCF	heart:	n/a
29	chr14:71105122-71105172	HPAEpiC	pulmonary alveolar:	n/a
30	chr14:71105122-71105172	ovcar-3	ovarian:	n/a
31	chr14:71105122-71105172	NH-A	brain:	n/a
32	chr14:71105122-71105172	GM12891	blood:	n/a
33	chr14:71105122-71105172	BJ	skin:	n/a
34	chr14:71105122-71105172	AG10803	skin:	n/a
35	chr14:71105122-71105172	SK-N-MC	brain:	n/a
36	chr14:71105122-71105172	AG09309	skin:	n/a
37	chr14:71105122-71105172	HCPEpiC	choroid plexus:	n/a
38	chr14:71105122-71105172	AG04449	skin:	fetal
39	chr14:71105122-71105172	PFSK-1	brain:	n/a
40	chr14:71105122-71105172	A549	lung:	n/a
41	chr14:71105122-71105172	U87	brain:	n/a
42	chr14:71105122-71105172	H1-hESC	embryonic stem cell:	embryo
43	chr14:71105122-71105172	HUVEC	blood vessel:	n/a
44	chr14:71105122-71105172	AG09319	gingival:	n/a
45	chr14:71105122-71105172	GM12878	blood:	n/a
46	chr14:71105122-71105172	HIPEpiC	eye:	n/a
47	chr14:71105122-71105172	HEEpiC	esophagus:	n/a
48	chr14:71105122-71105172	PrEC	prostate:	n/a
49	chr14:71105122-71105172	IMR90	lung:	fetal
50	chr14:71105122-71105172	Hepatocyte	liver:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71102508..71105172-chr14:71277207..71278775,2	MCF-7	breast:

No data

Variant related genes	Relation type
TTC9	TF binding region
TTC9	CpG island

rs_ID	r²[population]
rs11625206	1.00[ASN][1000 genomes]
rs2233135	1.00[ASN][1000 genomes]
rs28655624	1.00[ASN][1000 genomes]
rs3088143	1.00[ASN][1000 genomes]
rs45560640	1.00[ASN][1000 genomes]
rs61977961	1.00[ASN][1000 genomes]
rs61988421	1.00[ASN][1000 genomes]
rs61988422	1.00[ASN][1000 genomes]
rs61988423	1.00[ASN][1000 genomes]
rs72721903	1.00[ASN][1000 genomes]
rs9323544	1.00[ASN][1000 genomes]
rs953872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71092200-71107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:71092200-71107600	Weak transcription	HSMM	muscle
3	chr14:71094600-71107200	Weak transcription	HSMMtube	muscle
4	chr14:71098400-71107200	Weak transcription	Thymus	Thymus
5	chr14:71099000-71107000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:71102000-71107400	Weak transcription	Fetal Brain Female	brain
7	chr14:71102600-71106800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr14:71103000-71107600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:71103200-71106200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:71103200-71107000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr14:71104200-71107200	Weak transcription	Spleen	Spleen
12	chr14:71104600-71105400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr14:71104600-71105400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr14:71104800-71105400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr14:71104800-71106200	Weak transcription	GM12878-XiMat	blood
16	chr14:71104800-71106400	Weak transcription	Primary B cells from cord blood	blood
17	chr14:71104800-71106400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr14:71105000-71105600	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links