Variant report

Variant	rs61988423
Chromosome Location	chr14:71155059-71155060
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11625206	1.00[ASN][1000 genomes]
rs13379090	0.91[EUR][1000 genomes]
rs2233135	1.00[ASN][1000 genomes]
rs28655624	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3088143	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45560640	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61977961	1.00[ASN][1000 genomes]
rs61988421	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61988422	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719792	1.00[ASN][1000 genomes]
rs72721903	1.00[ASN][1000 genomes]
rs9323544	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs953872	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527969	chr14:71150421-71155984	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv275293	chr14:71151777-71155720	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71133200-71173000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:71134600-71158600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:71141000-71160800	Weak transcription	Primary T cells from cord blood	blood
4	chr14:71143000-71177800	Weak transcription	Primary B cells from cord blood	blood
5	chr14:71153200-71157000	Weak transcription	Brain Germinal Matrix	brain
6	chr14:71153400-71165200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:71154000-71156800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:71154400-71156800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:71154400-71165000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:71154600-71156800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr14:71154600-71156800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:71154600-71159000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:71154600-71165000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr14:71154600-71165200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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