Variant report

Variant	rs62019993
Chromosome Location	chr15:55746334-55746335
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs11631285	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11855303	0.87[AFR][1000 genomes]
rs12911195	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12912400	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12914468	0.84[AFR][1000 genomes]
rs2247458	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2414413	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2444040	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2444041	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2444042	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2447713	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28368404	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28680405	1.00[EUR][1000 genomes]
rs28702037	1.00[EUR][1000 genomes]
rs28773006	1.00[EUR][1000 genomes]
rs28800886	1.00[EUR][1000 genomes]
rs28816070	1.00[EUR][1000 genomes]
rs4553564	0.87[AFR][1000 genomes]
rs537575	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs540393	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs550013	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs551834	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55974808	1.00[EUR][1000 genomes]
rs562086	1.00[EUR][1000 genomes]
rs587049	0.90[AFR][1000 genomes]
rs58886852	1.00[EUR][1000 genomes]
rs593431	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59563514	1.00[AMR][1000 genomes]
rs596262	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59998724	1.00[EUR][1000 genomes]
rs610286	1.00[AMR][1000 genomes]
rs61254561	1.00[EUR][1000 genomes]
rs61498471	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61729647	1.00[EUR][1000 genomes]
rs61753409	1.00[EUR][1000 genomes]
rs626248	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs628438	1.00[EUR][1000 genomes]
rs6493782	0.90[AFR][1000 genomes]
rs6493784	0.87[AFR][1000 genomes]
rs6493786	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs649709	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs691062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs691212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs691514	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7163097	1.00[AFR][1000 genomes]
rs7169473	0.84[AFR][1000 genomes]
rs7169776	0.87[AFR][1000 genomes]
rs7169910	0.84[AFR][1000 genomes]
rs7171076	1.00[EUR][1000 genomes]
rs7171082	1.00[EUR][1000 genomes]
rs7174186	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7174449	1.00[EUR][1000 genomes]
rs7180824	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7180984	1.00[EUR][1000 genomes]
rs73413205	1.00[EUR][1000 genomes]
rs74017524	1.00[EUR][1000 genomes]
rs8024227	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8024917	1.00[EUR][1000 genomes]
rs8025181	1.00[EUR][1000 genomes]
rs8025982	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8026616	1.00[EUR][1000 genomes]
rs8026815	1.00[EUR][1000 genomes]
rs8027015	1.00[EUR][1000 genomes]
rs8029172	0.90[AFR][1000 genomes]
rs8032778	1.00[EUR][1000 genomes]
rs8034383	1.00[EUR][1000 genomes]
rs8035790	1.00[EUR][1000 genomes]
rs8037279	1.00[EUR][1000 genomes]
rs8042087	1.00[EUR][1000 genomes]
rs8043147	1.00[EUR][1000 genomes]
rs9744860	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1051046	chr15:55529291-55821973	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1036173	chr15:55547689-55812194	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv542391	chr15:55547689-55812194	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv569523	chr15:55555602-55836704	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
7	nsv1040917	chr15:55562940-55943942	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	nsv531054	chr15:55571230-55914205	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv948522	chr15:55639867-56032099	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv520799	chr15:55645661-55760522	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
11	nsv1041635	chr15:55658171-55943942	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	nsv904244	chr15:55687969-55770911	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
13	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
14	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55736400-55750000	Weak transcription	Right Ventricle	heart
2	chr15:55739200-55749400	Weak transcription	Ovary	ovary
3	chr15:55739800-55749400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr15:55740000-55749200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:55740000-55768400	Weak transcription	Pancreas	Pancrea
6	chr15:55743800-55749600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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