Variant report

Variant	rs62086118
Chromosome Location	chr18:9480880-9480881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9480776..9482836-chr18:9514325..9515970,2	MCF-7	breast:
2	chr18:9475346..9479784-chr18:9480554..9484276,7	K562	blood:

Variant related genes	Relation type
ENSG00000017797	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs2277709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2840354	0.83[ASN][1000 genomes]
rs3786174	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57539299	0.83[ASN][1000 genomes]
rs58982927	0.83[ASN][1000 genomes]
rs59114729	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59992205	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60290408	0.81[ASN][1000 genomes]
rs61166388	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086114	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086115	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086119	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086120	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086121	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086146	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086147	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086151	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086152	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086155	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086156	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086158	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086159	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087363	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087368	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087370	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087371	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087372	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62087378	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087402	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087403	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087404	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087406	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087407	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087411	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087412	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087414	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087415	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087416	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62087417	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087427	0.81[ASN][1000 genomes]
rs7237018	0.83[ASN][1000 genomes]
rs72636719	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73393877	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73393880	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73395717	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73395719	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs894757	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1056407	chr18:9144345-9553764	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1062025	chr18:9287249-9552470	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv543643	chr18:9287249-9552470	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv833585	chr18:9401630-9597291	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv428005	chr18:9401658-9542396	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9476600-9481800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:9476600-9481800	Weak transcription	Pancreas	Pancrea
3	chr18:9476600-9484200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr18:9476800-9481200	Weak transcription	Right Atrium	heart
5	chr18:9476800-9482400	Weak transcription	Brain Anterior Caudate	brain
6	chr18:9476800-9494000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr18:9476800-9496000	Weak transcription	Stomach Mucosa	stomach
8	chr18:9477000-9481400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr18:9477000-9482400	Weak transcription	Primary T cells from cord blood	blood
10	chr18:9477000-9482400	Weak transcription	Right Ventricle	heart
11	chr18:9477000-9482800	Weak transcription	Brain Hippocampus Middle	brain
12	chr18:9477000-9483600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr18:9477000-9485400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr18:9477000-9486000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr18:9477000-9489800	Weak transcription	HUVEC	blood vessel
16	chr18:9477000-9514000	Weak transcription	NH-A	brain
17	chr18:9477200-9481800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr18:9477200-9482000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr18:9477200-9482000	Weak transcription	Osteobl	bone
20	chr18:9477200-9482400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr18:9477200-9482400	Weak transcription	Psoas Muscle	Psoas
22	chr18:9477200-9482400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr18:9477200-9484200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr18:9477200-9513800	Weak transcription	HSMM	muscle
25	chr18:9477400-9482400	Weak transcription	Adipose Nuclei	Adipose
26	chr18:9477400-9482400	Weak transcription	Brain Substantia Nigra	brain
27	chr18:9477400-9485000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr18:9477400-9492400	Weak transcription	A549	lung
29	chr18:9477400-9493600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr18:9477600-9482400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr18:9477600-9482800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr18:9477600-9484000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr18:9477600-9484600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr18:9477600-9485000	Weak transcription	Liver	Liver
35	chr18:9477600-9485200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr18:9477600-9488000	Weak transcription	HepG2	liver
37	chr18:9477600-9491000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr18:9477600-9494400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr18:9477800-9481800	Weak transcription	Colon Smooth Muscle	Colon
40	chr18:9477800-9482400	Weak transcription	Brain Angular Gyrus	brain
41	chr18:9477800-9482600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr18:9477800-9484000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr18:9477800-9488600	Weak transcription	Fetal Lung	lung
44	chr18:9477800-9494800	Weak transcription	HMEC	breast
45	chr18:9477800-9501800	Weak transcription	NHDF-Ad	bronchial
46	chr18:9477800-9503200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr18:9478000-9481400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr18:9478000-9482600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr18:9478000-9482800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr18:9478000-9484800	Weak transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links