Variant report

Variant	rs62087378
Chromosome Location	chr18:9521495-9521496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9515412..9517227-chr18:9520655..9522238,2	K562	blood:
2	chr18:9516467..9518987-chr18:9520554..9522788,2	MCF-7	breast:
3	chr18:9518087..9520261-chr18:9521010..9523550,2	K562	blood:

Variant related genes	Relation type
ENSG00000273352	Chromatin interaction
ENSG00000251994	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1036930	0.83[ASN][1000 genomes]
rs12327541	0.83[ASN][1000 genomes]
rs16955156	0.94[AFR][1000 genomes]
rs16955297	0.83[ASN][1000 genomes]
rs1942150	0.81[ASN][1000 genomes]
rs2028657	0.83[ASN][1000 genomes]
rs2028659	0.81[ASN][1000 genomes]
rs2277709	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2840354	0.90[ASN][1000 genomes]
rs35234665	0.81[ASN][1000 genomes]
rs35911400	0.81[ASN][1000 genomes]
rs3786174	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55841197	0.83[ASN][1000 genomes]
rs56883068	0.83[ASN][1000 genomes]
rs57025551	0.81[ASN][1000 genomes]
rs57539299	0.90[ASN][1000 genomes]
rs58982927	0.90[ASN][1000 genomes]
rs59114729	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59992205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60290408	0.87[ASN][1000 genomes]
rs61166388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61428228	0.85[AFR][1000 genomes]
rs62086114	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086115	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086118	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086119	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086120	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086121	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62086146	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086151	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086152	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086155	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086156	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086158	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62086159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087363	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087364	0.81[ASN][1000 genomes]
rs62087368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087370	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087371	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087372	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62087402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087403	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087406	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087407	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087411	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087416	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62087417	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62087427	0.87[ASN][1000 genomes]
rs62087456	0.83[ASN][1000 genomes]
rs62088860	0.83[ASN][1000 genomes]
rs62088870	0.83[ASN][1000 genomes]
rs62088872	0.83[ASN][1000 genomes]
rs62088873	0.83[ASN][1000 genomes]
rs62088875	0.83[ASN][1000 genomes]
rs62088876	0.83[ASN][1000 genomes]
rs6506677	0.83[ASN][1000 genomes]
rs7233308	0.83[ASN][1000 genomes]
rs7234355	0.83[ASN][1000 genomes]
rs7237018	0.90[ASN][1000 genomes]
rs7238137	0.83[ASN][1000 genomes]
rs7238375	0.81[ASN][1000 genomes]
rs7240572	0.81[ASN][1000 genomes]
rs7241781	0.81[ASN][1000 genomes]
rs72636719	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73393877	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73393880	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73393885	0.85[AFR][1000 genomes]
rs73395717	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73395719	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8099027	0.81[ASN][1000 genomes]
rs894757	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9946939	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1056407	chr18:9144345-9553764	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1062025	chr18:9287249-9552470	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv543643	chr18:9287249-9552470	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv833585	chr18:9401630-9597291	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv428005	chr18:9401658-9542396	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	esv3693417	chr18:9512985-9693638	Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9478000-9522400	Weak transcription	Hela-S3	cervix
2	chr18:9479000-9533200	Weak transcription	Aorta	Aorta
3	chr18:9479000-9533600	Weak transcription	Gastric	stomach
4	chr18:9495200-9530400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr18:9495200-9533600	Weak transcription	Right Ventricle	heart
6	chr18:9495400-9524000	Weak transcription	Spleen	Spleen
7	chr18:9495400-9534000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr18:9496800-9534000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr18:9497400-9532600	Weak transcription	Colonic Mucosa	Colon
10	chr18:9498400-9523200	Weak transcription	Esophagus	oesophagus
11	chr18:9499400-9525000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr18:9500800-9535000	Weak transcription	Fetal Heart	heart
13	chr18:9505200-9524600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr18:9506400-9522400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr18:9506800-9532000	Weak transcription	Pancreas	Pancrea
16	chr18:9507200-9522000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr18:9508000-9522400	Weak transcription	Lung	lung
18	chr18:9508000-9522600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr18:9508000-9531600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr18:9508400-9522400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr18:9508400-9522400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr18:9508600-9521800	Weak transcription	Ovary	ovary
23	chr18:9508600-9522000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr18:9508600-9525200	Weak transcription	Brain Germinal Matrix	brain
25	chr18:9508600-9531800	Weak transcription	Small Intestine	intestine
26	chr18:9509000-9522200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr18:9510800-9522200	Weak transcription	Fetal Lung	lung
28	chr18:9512000-9521800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr18:9512200-9524600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr18:9512800-9524400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr18:9513200-9524600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr18:9513200-9526600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr18:9513200-9534000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr18:9513600-9537800	Weak transcription	Fetal Brain Male	brain
35	chr18:9514200-9522200	Weak transcription	Fetal Intestine Small	intestine
36	chr18:9514200-9522400	Weak transcription	HSMMtube	muscle
37	chr18:9514200-9523200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr18:9514400-9521600	Weak transcription	HepG2	liver
39	chr18:9514400-9522600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr18:9514400-9524000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr18:9514600-9522000	Weak transcription	HMEC	breast
42	chr18:9514600-9524600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr18:9514600-9528800	Weak transcription	NH-A	brain
44	chr18:9514600-9530200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr18:9515600-9526800	Weak transcription	A549	lung
46	chr18:9515800-9522400	Weak transcription	Fetal Kidney	kidney
47	chr18:9516000-9522000	Weak transcription	Primary B cells from cord blood	blood
48	chr18:9516200-9521600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr18:9516200-9522000	Weak transcription	NHDF-Ad	bronchial
50	chr18:9516200-9526800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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