Variant report

Variant	rs72636719
Chromosome Location	chr18:9461906-9461907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9460474..9464990-chr18:9473523..9476217,6	MCF-7	breast:
2	chr18:9458358..9463609-chr18:9472840..9478213,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000017797	Chromatin interaction
ENSG00000273335	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12969264	0.81[ASN][1000 genomes]
rs2277709	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2840354	0.80[ASN][1000 genomes]
rs3786174	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57539299	0.80[ASN][1000 genomes]
rs58982927	0.80[ASN][1000 genomes]
rs59114729	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59992205	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61166388	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62086114	0.97[ASN][1000 genomes]
rs62086115	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62086118	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62086119	0.97[ASN][1000 genomes]
rs62086120	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62086121	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62086146	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62086147	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62086151	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62086152	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62086155	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62086156	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62086158	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62086159	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087363	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087368	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087370	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087371	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087372	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62087378	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087402	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087403	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087404	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087406	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087407	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087411	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087412	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087414	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087415	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087416	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62087417	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7237018	0.80[ASN][1000 genomes]
rs73393877	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73393880	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73395717	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73395719	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs894757	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1056407	chr18:9144345-9553764	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1062025	chr18:9287249-9552470	Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv543643	chr18:9287249-9552470	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv833585	chr18:9401630-9597291	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv428005	chr18:9401658-9542396	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9454800-9466600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:9461800-9462200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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